Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00888 (long intergenic non-protein coding RNA 888)

Identity

Other alias-
HGNC (Hugo) LINC00888
LocusID (NCBI) 100505687
Atlas_Id 65648
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 183447651 and ends at 183456012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00888   48575
Cards
Entrez_Gene (NCBI)LINC00888  100505687  long intergenic non-protein coding RNA 888
Aliases
GeneCards (Weizmann)LINC00888
Ensembl hg19 (Hinxton)ENSG00000240024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240024 [Gene_View]  chr3:183447651-183456012 [Contig_View]  LINC00888 [Vega]
ICGC DataPortalENSG00000240024
TCGA cBioPortalLINC00888
AceView (NCBI)LINC00888
Genatlas (Paris)LINC00888
WikiGenes100505687
SOURCE (Princeton)LINC00888
Genetics Home Reference (NIH)LINC00888
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00888  -     chr3:183447651-183456012 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00888  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00888 - 3q27.1 [CytoView hg19]  LINC00888 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBILINC00888 [Mapview hg19]  LINC00888 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057000 BU681610 BX421767
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00888
Cluster EST : UnigeneHs.551751 [ NCBI ]
CGAP (NCI)Hs.551751
Alternative Splicing GalleryENSG00000240024
Gene ExpressionLINC00888 [ NCBI-GEO ]   LINC00888 [ EBI - ARRAY_EXPRESS ]   LINC00888 [ SEEK ]   LINC00888 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00888 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505687
GTEX Portal (Tissue expression)LINC00888
Human Protein AtlasENSG00000240024-LINC00888 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00888
DMDM Disease mutations100505687
Blocks (Seattle)LINC00888
Human Protein Atlas [tissue]ENSG00000240024-LINC00888 [tissue]
Protein Interaction databases
FunCoupENSG00000240024
BioGRIDLINC00888
STRING (EMBL)LINC00888
ZODIACLINC00888
Ontologies - Pathways
Huge Navigator LINC00888 [HugePedia]
snp3D : Map Gene to Disease100505687
BioCentury BCIQLINC00888
ClinGenLINC00888
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505687
Clinical trialLINC00888
Miscellaneous
canSAR (ICR)LINC00888 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00888
EVEXLINC00888
GoPubMedLINC00888
iHOPLINC00888
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:01 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.