Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00901 (long intergenic non-protein coding RNA 901)

Identity

Alias_namesLSAMP-AS4
LSAMP antisense RNA 4
Alias_symbol (synonym)TCONS_00005428
BC040587
Other alias
HGNC (Hugo) LINC00901
LocusID (NCBI) 100506724
Atlas_Id 65659
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 116640278 and ends at 116651085 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00901   40352
Cards
Entrez_Gene (NCBI)LINC00901  100506724  long intergenic non-protein coding RNA 901
AliasesLSAMP-AS4; TCONS_00005428
GeneCards (Weizmann)LINC00901
Ensembl hg19 (Hinxton)ENSG00000242385 [Gene_View]  chr3:116640278-116651085 [Contig_View]  LINC00901 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242385 [Gene_View]  chr3:116640278-116651085 [Contig_View]  LINC00901 [Vega]
ICGC DataPortalENSG00000242385
TCGA cBioPortalLINC00901
AceView (NCBI)LINC00901
Genatlas (Paris)LINC00901
WikiGenes100506724
SOURCE (Princeton)LINC00901
Genetics Home Reference (NIH)LINC00901
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00901  -     chr3:116640278-116651085 +  3q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00901  -     3q13.31   [Description]    (hg38-Dec_2013)
EnsemblLINC00901 - 3q13.31 [CytoView hg19]  LINC00901 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBILINC00901 [Mapview hg19]  LINC00901 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040587 HG495970
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)LINC00901
Cluster EST : UnigeneHs.125983 [ NCBI ]
CGAP (NCI)Hs.125983
Alternative Splicing GalleryENSG00000242385
Gene ExpressionLINC00901 [ NCBI-GEO ]   LINC00901 [ EBI - ARRAY_EXPRESS ]   LINC00901 [ SEEK ]   LINC00901 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00901 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506724
GTEX Portal (Tissue expression)LINC00901
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00901
DMDM Disease mutations100506724
Blocks (Seattle)LINC00901
Human Protein AtlasENSG00000242385
Protein Interaction databases
FunCoupENSG00000242385
BioGRIDLINC00901
STRING (EMBL)LINC00901
ZODIACLINC00901
Ontologies - Pathways
Huge Navigator LINC00901 [HugePedia]
snp3D : Map Gene to Disease100506724
BioCentury BCIQLINC00901
ClinGenLINC00901
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506724
Clinical trialLINC00901
Miscellaneous
canSAR (ICR)LINC00901 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00901
EVEXLINC00901
GoPubMedLINC00901
iHOPLINC00901
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:12:35 CET 2017

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