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LINC00901 (long intergenic non-protein coding RNA 901)

Identity

Alias (NCBI)LSAMP-AS4
TCONS_00005428
HGNC (Hugo) LINC00901
HGNC Alias symbTCONS_00005428
BC040587
HGNC Previous nameLSAMP-AS4
HGNC Previous nameLSAMP antisense RNA 4
LocusID (NCBI) 100506724
Atlas_Id 65659
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 116921431 and ends at 116932238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00901   40352
Cards
Entrez_Gene (NCBI)LINC00901    long intergenic non-protein coding RNA 901
AliasesLSAMP-AS4; TCONS_00005428
GeneCards (Weizmann)LINC00901
Ensembl hg19 (Hinxton)ENSG00000242385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242385 [Gene_View]  ENSG00000242385 [Sequence]  chr3:116921431-116932238 [Contig_View]  LINC00901 [Vega]
ICGC DataPortalENSG00000242385
TCGA cBioPortalLINC00901
AceView (NCBI)LINC00901
Genatlas (Paris)LINC00901
SOURCE (Princeton)LINC00901
Genetics Home Reference (NIH)LINC00901
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00901  -     chr3:116921431-116932238 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00901  -     3q13.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC00901 - 3q13.31 [CytoView hg19]  LINC00901 - 3q13.31 [CytoView hg38]
ImmunoBaseENSG00000242385
Genome Data Viewer NCBILINC00901 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC040587
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00901
Gene ExpressionLINC00901 [ NCBI-GEO ]   LINC00901 [ EBI - ARRAY_EXPRESS ]   LINC00901 [ SEEK ]   LINC00901 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00901 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00901 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506724
GTEX Portal (Tissue expression)LINC00901
Human Protein AtlasENSG00000242385-LINC00901 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00901
Human Protein Atlas [tissue]ENSG00000242385-LINC00901 [tissue]
Protein Interaction databases
BioGRIDLINC00901
STRING (EMBL)LINC00901
ZODIACLINC00901
Ontologies - Pathways
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00901
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:46 CEST 2021

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