Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00901 (long intergenic non-protein coding RNA 901)


HGNC (Hugo) LINC00901
HGNC Alias symbTCONS_00005428
HGNC Previous nameLSAMP-AS4
HGNC Previous nameLSAMP antisense RNA 4
LocusID (NCBI) 100506724
Atlas_Id 65659
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 116921431 and ends at 116932238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00901   40352
Entrez_Gene (NCBI)LINC00901    long intergenic non-protein coding RNA 901
AliasesLSAMP-AS4; TCONS_00005428
GeneCards (Weizmann)LINC00901
Ensembl hg19 (Hinxton)ENSG00000242385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242385 [Gene_View]  ENSG00000242385 [Sequence]  chr3:116921431-116932238 [Contig_View]  LINC00901 [Vega]
ICGC DataPortalENSG00000242385
TCGA cBioPortalLINC00901
AceView (NCBI)LINC00901
Genatlas (Paris)LINC00901
SOURCE (Princeton)LINC00901
Genetics Home Reference (NIH)LINC00901
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00901  -     chr3:116921431-116932238 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00901  -     3q13.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC00901 - 3q13.31 [CytoView hg19]  LINC00901 - 3q13.31 [CytoView hg38]
Genome Data Viewer NCBILINC00901 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC040587
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00901
Gene ExpressionLINC00901 [ NCBI-GEO ]   LINC00901 [ EBI - ARRAY_EXPRESS ]   LINC00901 [ SEEK ]   LINC00901 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00901 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00901 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506724
GTEX Portal (Tissue expression)LINC00901
Human Protein AtlasENSG00000242385-LINC00901 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00901
Human Protein Atlas [tissue]ENSG00000242385-LINC00901 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:56:46 CEST 2021

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