Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00903 (long intergenic non-protein coding RNA 903)

Identity

Alias_namesLSAMP-AS2
LSAMP antisense RNA 2
Other alias
HGNC (Hugo) LINC00903
LocusID (NCBI) 100861506
Atlas_Id 79389
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 116552473 and ends at 116568441 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00903   40351
Cards
Entrez_Gene (NCBI)LINC00903  100861506  long intergenic non-protein coding RNA 903
AliasesLSAMP-AS2
GeneCards (Weizmann)LINC00903
Ensembl hg19 (Hinxton)ENSG00000241397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241397 [Gene_View]  ENSG00000241397 [Sequence]  chr3:116552473-116568441 [Contig_View]  LINC00903 [Vega]
ICGC DataPortalENSG00000241397
TCGA cBioPortalLINC00903
AceView (NCBI)LINC00903
Genatlas (Paris)LINC00903
WikiGenes100861506
SOURCE (Princeton)LINC00903
Genetics Home Reference (NIH)LINC00903
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00903  -     chr3:116552473-116568441 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00903  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00903 - 3q13.31 [CytoView hg19]  LINC00903 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBILINC00903 [Mapview hg19]  LINC00903 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF361983 DB446734
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00903
Cluster EST : UnigeneHs.641878 [ NCBI ]
CGAP (NCI)Hs.641878
Alternative Splicing GalleryENSG00000241397
Gene ExpressionLINC00903 [ NCBI-GEO ]   LINC00903 [ EBI - ARRAY_EXPRESS ]   LINC00903 [ SEEK ]   LINC00903 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00903 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861506
GTEX Portal (Tissue expression)LINC00903
Human Protein AtlasENSG00000241397-LINC00903 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00903
DMDM Disease mutations100861506
Blocks (Seattle)LINC00903
Human Protein Atlas [tissue]ENSG00000241397-LINC00903 [tissue]
Protein Interaction databases
FunCoupENSG00000241397
BioGRIDLINC00903
STRING (EMBL)LINC00903
ZODIACLINC00903
Ontologies - Pathways
Huge Navigator LINC00903 [HugePedia]
snp3D : Map Gene to Disease100861506
BioCentury BCIQLINC00903
ClinGenLINC00903
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861506
Clinical trialLINC00903
Miscellaneous
canSAR (ICR)LINC00903 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00903
EVEXLINC00903
GoPubMedLINC00903
iHOPLINC00903
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:39 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.