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LINC00938 (long intergenic non-protein coding RNA 938)

Identity

Other alias-
HGNC (Hugo) LINC00938
LocusID (NCBI) 400027
Atlas_Id 65685
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 45725720 and ends at 45727921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00938   48630
Cards
Entrez_Gene (NCBI)LINC00938  400027  long intergenic non-protein coding RNA 938
Aliases
GeneCards (Weizmann)LINC00938
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:45725720-45727921 [Contig_View]  LINC00938 [Vega]
TCGA cBioPortalLINC00938
AceView (NCBI)LINC00938
Genatlas (Paris)LINC00938
WikiGenes400027
SOURCE (Princeton)LINC00938
Genetics Home Reference (NIH)LINC00938
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00938  -     chr12:45725720-45727921 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00938  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblLINC00938 - 12q12 [CytoView hg19]  LINC00938 - 12q12 [CytoView hg38]
Mapping of homologs : NCBILINC00938 [Mapview hg19]  LINC00938 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC008245 BC037237 BC047417
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00938
Cluster EST : UnigeneHs.597122 [ NCBI ]
CGAP (NCI)Hs.597122
Gene ExpressionLINC00938 [ NCBI-GEO ]   LINC00938 [ EBI - ARRAY_EXPRESS ]   LINC00938 [ SEEK ]   LINC00938 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00938 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400027
GTEX Portal (Tissue expression)LINC00938
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00938
DMDM Disease mutations400027
Blocks (Seattle)LINC00938
Protein Interaction databases
BioGRIDLINC00938
STRING (EMBL)LINC00938
ZODIACLINC00938
Ontologies - Pathways
Huge Navigator LINC00938 [HugePedia]
snp3D : Map Gene to Disease400027
BioCentury BCIQLINC00938
ClinGenLINC00938
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400027
Clinical trialLINC00938
Miscellaneous
canSAR (ICR)LINC00938 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00938
EVEXLINC00938
GoPubMedLINC00938
iHOPLINC00938
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:09 CET 2017

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