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LINC00954 (long intergenic non-protein coding RNA 954)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00954
HGNC Alias symbFLJ12334
LocusID (NCBI) 400946
Atlas_Id 65696
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 19868854 and ends at 19885047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00954   48668
Cards
Entrez_Gene (NCBI)LINC00954    long intergenic non-protein coding RNA 954
Aliases
GeneCards (Weizmann)LINC00954
Ensembl hg19 (Hinxton)ENSG00000228784 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228784 [Gene_View]  ENSG00000228784 [Sequence]  chr2:19868854-19885047 [Contig_View]  LINC00954 [Vega]
ICGC DataPortalENSG00000228784
TCGA cBioPortalLINC00954
AceView (NCBI)LINC00954
Genatlas (Paris)LINC00954
SOURCE (Princeton)LINC00954
Genetics Home Reference (NIH)LINC00954
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00954  -     chr2:19868854-19885047 +  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00954  -     2p24.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00954 - 2p24.1 [CytoView hg19]  LINC00954 - 2p24.1 [CytoView hg38]
ImmunoBaseENSG00000228784
Genome Data Viewer NCBILINC00954 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK022396 AK097927 BC068572 DB155534
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00954
Gene ExpressionLINC00954 [ NCBI-GEO ]   LINC00954 [ EBI - ARRAY_EXPRESS ]   LINC00954 [ SEEK ]   LINC00954 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00954 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00954 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400946
GTEX Portal (Tissue expression)LINC00954
Human Protein AtlasENSG00000228784-LINC00954 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00954
Human Protein Atlas [tissue]ENSG00000228784-LINC00954 [tissue]
Protein Interaction databases
BioGRIDLINC00954
STRING (EMBL)LINC00954
ZODIACLINC00954
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00954
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:52 CEST 2021

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