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LINC00958 (long intergenic non-protein coding RNA 958)

Identity

Other alias-
HGNC (Hugo) LINC00958
LocusID (NCBI) 100506305
Atlas_Id 65699
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 12979534 and ends at 12989548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00958   48671
Cards
Entrez_Gene (NCBI)LINC00958  100506305  long intergenic non-protein coding RNA 958
Aliases
GeneCards (Weizmann)LINC00958
Ensembl hg19 (Hinxton)ENSG00000251381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251381 [Gene_View]  chr11:12979534-12989548 [Contig_View]  LINC00958 [Vega]
ICGC DataPortalENSG00000251381
TCGA cBioPortalLINC00958
AceView (NCBI)LINC00958
Genatlas (Paris)LINC00958
WikiGenes100506305
SOURCE (Princeton)LINC00958
Genetics Home Reference (NIH)LINC00958
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00958  -     chr11:12979534-12989548 -  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00958  -     11p15.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00958 - 11p15.3 [CytoView hg19]  LINC00958 - 11p15.3 [CytoView hg38]
Mapping of homologs : NCBILINC00958 [Mapview hg19]  LINC00958 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001432 BQ772479 BQ929741
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00958
Cluster EST : UnigeneHs.153408 [ NCBI ]
CGAP (NCI)Hs.153408
Alternative Splicing GalleryENSG00000251381
Gene ExpressionLINC00958 [ NCBI-GEO ]   LINC00958 [ EBI - ARRAY_EXPRESS ]   LINC00958 [ SEEK ]   LINC00958 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00958 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506305
GTEX Portal (Tissue expression)LINC00958
Human Protein AtlasENSG00000251381-LINC00958 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00958
DMDM Disease mutations100506305
Blocks (Seattle)LINC00958
Human Protein Atlas [tissue]ENSG00000251381-LINC00958 [tissue]
Protein Interaction databases
FunCoupENSG00000251381
BioGRIDLINC00958
STRING (EMBL)LINC00958
ZODIACLINC00958
Ontologies - Pathways
Huge Navigator LINC00958 [HugePedia]
snp3D : Map Gene to Disease100506305
BioCentury BCIQLINC00958
ClinGenLINC00958
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506305
Clinical trialLINC00958
Miscellaneous
canSAR (ICR)LINC00958 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00958
EVEXLINC00958
GoPubMedLINC00958
iHOPLINC00958
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:12 CET 2017

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