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LINC00989 (long intergenic non-protein coding RNA 989)

Identity

Other alias-
HGNC (Hugo) LINC00989
LocusID (NCBI) 100506035
Atlas_Id 65715
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 79492593 and ends at 79576460 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00989   48918
Cards
Entrez_Gene (NCBI)LINC00989  100506035  long intergenic non-protein coding RNA 989
Aliases
GeneCards (Weizmann)LINC00989
Ensembl hg19 (Hinxton)ENSG00000250334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250334 [Gene_View]  chr4:79492593-79576460 [Contig_View]  LINC00989 [Vega]
ICGC DataPortalENSG00000250334
TCGA cBioPortalLINC00989
AceView (NCBI)LINC00989
Genatlas (Paris)LINC00989
WikiGenes100506035
SOURCE (Princeton)LINC00989
Genetics Home Reference (NIH)LINC00989
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00989  -     chr4:79492593-79576460 +  4q21.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00989  -     4q21.21   [Description]    (hg19-Feb_2009)
EnsemblLINC00989 - 4q21.21 [CytoView hg19]  LINC00989 - 4q21.21 [CytoView hg38]
Mapping of homologs : NCBILINC00989 [Mapview hg19]  LINC00989 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123913 BC047610
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00989
Cluster EST : UnigeneHs.507664 [ NCBI ]
CGAP (NCI)Hs.507664
Alternative Splicing GalleryENSG00000250334
Gene ExpressionLINC00989 [ NCBI-GEO ]   LINC00989 [ EBI - ARRAY_EXPRESS ]   LINC00989 [ SEEK ]   LINC00989 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00989 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506035
GTEX Portal (Tissue expression)LINC00989
Human Protein AtlasENSG00000250334-LINC00989 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00989
DMDM Disease mutations100506035
Blocks (Seattle)LINC00989
Human Protein Atlas [tissue]ENSG00000250334-LINC00989 [tissue]
Protein Interaction databases
FunCoupENSG00000250334
BioGRIDLINC00989
STRING (EMBL)LINC00989
ZODIACLINC00989
Ontologies - Pathways
Huge Navigator LINC00989 [HugePedia]
snp3D : Map Gene to Disease100506035
BioCentury BCIQLINC00989
ClinGenLINC00989
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506035
Clinical trialLINC00989
Miscellaneous
canSAR (ICR)LINC00989 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00989
EVEXLINC00989
GoPubMedLINC00989
iHOPLINC00989
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:15 CET 2017

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