Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00998 (long intergenic non-protein coding RNA 998)

Identity

Other alias-
HGNC (Hugo) LINC00998
LocusID (NCBI) 401397
Atlas_Id 65721
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 113116718 and ends at 113118582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00998   48953
Cards
Entrez_Gene (NCBI)LINC00998  401397  long intergenic non-protein coding RNA 998
Aliases
GeneCards (Weizmann)LINC00998
Ensembl hg19 (Hinxton)ENSG00000214194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214194 [Gene_View]  chr7:113116718-113118582 [Contig_View]  LINC00998 [Vega]
ICGC DataPortalENSG00000214194
TCGA cBioPortalLINC00998
AceView (NCBI)LINC00998
Genatlas (Paris)LINC00998
WikiGenes401397
SOURCE (Princeton)LINC00998
Genetics Home Reference (NIH)LINC00998
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00998  -     chr7:113116718-113118582 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00998  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00998 - 7q31.1 [CytoView hg19]  LINC00998 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC00998 [Mapview hg19]  LINC00998 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC065765 BC107860 BQ446959 BU630382 BX537645
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00998
Cluster EST : UnigeneHs.117929 [ NCBI ]
CGAP (NCI)Hs.117929
Alternative Splicing GalleryENSG00000214194
Gene ExpressionLINC00998 [ NCBI-GEO ]   LINC00998 [ EBI - ARRAY_EXPRESS ]   LINC00998 [ SEEK ]   LINC00998 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00998 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401397
GTEX Portal (Tissue expression)LINC00998
Human Protein AtlasENSG00000214194-LINC00998 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D0T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D0T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D0T7
Splice isoforms : SwissVarA4D0T7
PhosPhoSitePlusA4D0T7
Domains : Interpro (EBI)DUF4730   
Domain families : Pfam (Sanger)DUF4730 (PF15873)   
Domain families : Pfam (NCBI)pfam15873   
Conserved Domain (NCBI)LINC00998
DMDM Disease mutations401397
Blocks (Seattle)LINC00998
SuperfamilyA4D0T7
Human Protein Atlas [tissue]ENSG00000214194-LINC00998 [tissue]
Peptide AtlasA4D0T7
IPIIPI00844352   IPI00903087   IPI00926646   
Protein Interaction databases
DIP (DOE-UCLA)A4D0T7
IntAct (EBI)A4D0T7
FunCoupENSG00000214194
BioGRIDLINC00998
STRING (EMBL)LINC00998
ZODIACLINC00998
Ontologies - Pathways
QuickGOA4D0T7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00998
Atlas of Cancer Signalling NetworkLINC00998
Wikipedia pathwaysLINC00998
Orthology - Evolution
OrthoDB401397
GeneTree (enSembl)ENSG00000214194
Phylogenetic Trees/Animal Genes : TreeFamLINC00998
HOVERGENA4D0T7
HOGENOMA4D0T7
Homologs : HomoloGeneLINC00998
Homology/Alignments : Family Browser (UCSC)LINC00998
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00998
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00998 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00998
dbVarLINC00998
ClinVarLINC00998
1000_GenomesLINC00998 
Exome Variant ServerLINC00998
ExAC (Exome Aggregation Consortium)ENSG00000214194
GNOMAD BrowserENSG00000214194
Genetic variants : HAPMAP401397
Genomic Variants (DGV)LINC00998 [DGVbeta]
DECIPHERLINC00998 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00998 
Mutations
ICGC Data PortalLINC00998 
TCGA Data PortalLINC00998 
Broad Tumor PortalLINC00998
OASIS PortalLINC00998 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00998
BioMutasearch LINC00998
DgiDB (Drug Gene Interaction Database)LINC00998
DoCM (Curated mutations)LINC00998 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00998 (select a term)
intoGenLINC00998
Cancer3DLINC00998(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00998
MedgenLINC00998
Genetic Testing Registry LINC00998
NextProtA4D0T7 [Medical]
TSGene401397
GENETestsLINC00998
Target ValidationLINC00998
Huge Navigator LINC00998 [HugePedia]
snp3D : Map Gene to Disease401397
BioCentury BCIQLINC00998
ClinGenLINC00998
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401397
Clinical trialLINC00998
Miscellaneous
canSAR (ICR)LINC00998 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00998
EVEXLINC00998
GoPubMedLINC00998
iHOPLINC00998
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:37:58 CET 2017

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