Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01001 (long intergenic non-protein coding RNA 1001)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01001
LocusID (NCBI) 100133161
Atlas_Id 65724
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 127134 and ends at 139117 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC01001   38540
Cards
Entrez_Gene (NCBI)LINC01001    long intergenic non-protein coding RNA 1001
Aliases
GeneCards (Weizmann)LINC01001
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:127134-139117 [Contig_View]  LINC01001 [Vega]
TCGA cBioPortalLINC01001
AceView (NCBI)LINC01001
Genatlas (Paris)LINC01001
SOURCE (Princeton)LINC01001
Genetics Home Reference (NIH)LINC01001
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01001  -     chr11:127134-139117 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01001  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathLINC01001 - 11p15.5 [CytoView hg19]  LINC01001 - 11p15.5 [CytoView hg38]
genome Data Viewer NCBILINC01001 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK293878 AK310751
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01001
Gene ExpressionLINC01001 [ NCBI-GEO ]   LINC01001 [ EBI - ARRAY_EXPRESS ]   LINC01001 [ SEEK ]   LINC01001 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01001 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01001 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133161
GTEX Portal (Tissue expression)LINC01001
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01001
Blocks (Seattle)LINC01001
Protein Interaction databases
BioGRIDLINC01001
STRING (EMBL)LINC01001
ZODIACLINC01001
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01001
EVEXLINC01001
GoPubMedLINC01001
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 17:01:20 CET 2020
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