Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01001 (long intergenic non-protein coding RNA 1001)


Alias (NCBI)-
HGNC (Hugo) LINC01001
LocusID (NCBI) 100133161
Atlas_Id 65724
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 127134 and ends at 139117 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01001   38540
Entrez_Gene (NCBI)LINC01001    long intergenic non-protein coding RNA 1001
GeneCards (Weizmann)LINC01001
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:127134-139117 [Contig_View]  LINC01001 [Vega]
TCGA cBioPortalLINC01001
AceView (NCBI)LINC01001
Genatlas (Paris)LINC01001
SOURCE (Princeton)LINC01001
Genetics Home Reference (NIH)LINC01001
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01001  -     chr11:127134-139117 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01001  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathLINC01001 - 11p15.5 [CytoView hg19]  LINC01001 - 11p15.5 [CytoView hg38]
genome Data Viewer NCBILINC01001 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK293878 AK310751
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01001
Gene ExpressionLINC01001 [ NCBI-GEO ]   LINC01001 [ EBI - ARRAY_EXPRESS ]   LINC01001 [ SEEK ]   LINC01001 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01001 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01001 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133161
GTEX Portal (Tissue expression)LINC01001
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01001
Blocks (Seattle)LINC01001
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:01:20 CET 2020

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