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LINC01006 (long intergenic non-protein coding RNA 1006)

Identity

Alias_namesC7orf13
chromosome 7 open reading frame 13
Alias_symbol (synonym)MY040
Other alias
HGNC (Hugo) LINC01006
LocusID (NCBI) 100506380
Atlas_Id 65729
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 156472099 and ends at 156603195 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01006   48971
Cards
Entrez_Gene (NCBI)LINC01006  100506380  long intergenic non-protein coding RNA 1006
AliasesC7orf13; MY040
GeneCards (Weizmann)LINC01006
Ensembl hg19 (Hinxton)ENSG00000182648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182648 [Gene_View]  chr7:156472099-156603195 [Contig_View]  LINC01006 [Vega]
ICGC DataPortalENSG00000182648
TCGA cBioPortalLINC01006
AceView (NCBI)LINC01006
Genatlas (Paris)LINC01006
WikiGenes100506380
SOURCE (Princeton)LINC01006
Genetics Home Reference (NIH)LINC01006
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01006  -     chr7:156472099-156603195 -  7q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01006  -     7q36.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01006 - 7q36.3 [CytoView hg19]  LINC01006 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBILINC01006 [Mapview hg19]  LINC01006 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM793926 BU932175 BX103419
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01006
Cluster EST : UnigeneHs.741680 [ NCBI ]
CGAP (NCI)Hs.741680
Alternative Splicing GalleryENSG00000182648
Gene ExpressionLINC01006 [ NCBI-GEO ]   LINC01006 [ EBI - ARRAY_EXPRESS ]   LINC01006 [ SEEK ]   LINC01006 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01006 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506380
GTEX Portal (Tissue expression)LINC01006
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI28
Splice isoforms : SwissVarQ8NI28
PhosPhoSitePlusQ8NI28
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01006
DMDM Disease mutations100506380
Blocks (Seattle)LINC01006
SuperfamilyQ8NI28
Human Protein AtlasENSG00000182648
Peptide AtlasQ8NI28
Protein Interaction databases
DIP (DOE-UCLA)Q8NI28
IntAct (EBI)Q8NI28
FunCoupENSG00000182648
BioGRIDLINC01006
STRING (EMBL)LINC01006
ZODIACLINC01006
Ontologies - Pathways
QuickGOQ8NI28
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01006
Atlas of Cancer Signalling NetworkLINC01006
Wikipedia pathwaysLINC01006
Orthology - Evolution
OrthoDB100506380
GeneTree (enSembl)ENSG00000182648
Phylogenetic Trees/Animal Genes : TreeFamLINC01006
HOVERGENQ8NI28
HOGENOMQ8NI28
Homologs : HomoloGeneLINC01006
Homology/Alignments : Family Browser (UCSC)LINC01006
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01006 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01006
dbVarLINC01006
ClinVarLINC01006
1000_GenomesLINC01006 
Exome Variant ServerLINC01006
ExAC (Exome Aggregation Consortium)LINC01006 (select the gene name)
Genetic variants : HAPMAP100506380
Genomic Variants (DGV)LINC01006 [DGVbeta]
DECIPHERLINC01006 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01006 
Mutations
ICGC Data PortalLINC01006 
TCGA Data PortalLINC01006 
Broad Tumor PortalLINC01006
OASIS PortalLINC01006 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01006
BioMutasearch LINC01006
DgiDB (Drug Gene Interaction Database)LINC01006
DoCM (Curated mutations)LINC01006 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01006 (select a term)
intoGenLINC01006
Cancer3DLINC01006(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01006
Genetic Testing Registry LINC01006
NextProtQ8NI28 [Medical]
TSGene100506380
GENETestsLINC01006
Target ValidationLINC01006
Huge Navigator LINC01006 [HugePedia]
snp3D : Map Gene to Disease100506380
BioCentury BCIQLINC01006
ClinGenLINC01006
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506380
Clinical trialLINC01006
Miscellaneous
canSAR (ICR)LINC01006 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01006
EVEXLINC01006
GoPubMedLINC01006
iHOPLINC01006
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:52 CEST 2017

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