Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01006 (long intergenic non-protein coding RNA 1006)

Identity

Alias_namesC7orf13
chromosome 7 open reading frame 13
Alias_symbol (synonym)MY040
Other alias
HGNC (Hugo) LINC01006
LocusID (NCBI) 100506380
Atlas_Id 65729
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 156264793 and ends at 156395889 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01006   48971
Cards
Entrez_Gene (NCBI)LINC01006  100506380  long intergenic non-protein coding RNA 1006
AliasesC7orf13; MY040
GeneCards (Weizmann)LINC01006
Ensembl hg19 (Hinxton)ENSG00000182648 [Gene_View]  chr7:156264793-156395889 [Contig_View]  LINC01006 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182648 [Gene_View]  chr7:156264793-156395889 [Contig_View]  LINC01006 [Vega]
ICGC DataPortalENSG00000182648
TCGA cBioPortalLINC01006
AceView (NCBI)LINC01006
Genatlas (Paris)LINC01006
WikiGenes100506380
SOURCE (Princeton)LINC01006
Genetics Home Reference (NIH)LINC01006
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01006  -     chr7:156264793-156395889 -  7q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01006  -     7q36.3   [Description]    (hg38-Dec_2013)
EnsemblLINC01006 - 7q36.3 [CytoView hg19]  LINC01006 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBILINC01006 [Mapview hg19]  LINC01006 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM793926 BU932175 BX103419 LN608179 LN608180
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929334
Consensus coding sequences : CCDS (NCBI)LINC01006
Cluster EST : UnigeneHs.741680 [ NCBI ]
CGAP (NCI)Hs.741680
Alternative Splicing GalleryENSG00000182648
Gene ExpressionLINC01006 [ NCBI-GEO ]   LINC01006 [ EBI - ARRAY_EXPRESS ]   LINC01006 [ SEEK ]   LINC01006 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01006 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506380
GTEX Portal (Tissue expression)LINC01006
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01006
DMDM Disease mutations100506380
Blocks (Seattle)LINC01006
Human Protein AtlasENSG00000182648
Protein Interaction databases
FunCoupENSG00000182648
BioGRIDLINC01006
STRING (EMBL)LINC01006
ZODIACLINC01006
Ontologies - Pathways
Huge Navigator LINC01006 [HugePedia]
snp3D : Map Gene to Disease100506380
BioCentury BCIQLINC01006
ClinGenLINC01006
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506380
Clinical trialLINC01006
Miscellaneous
canSAR (ICR)LINC01006 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01006
EVEXLINC01006
GoPubMedLINC01006
iHOPLINC01006
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:12:49 CET 2017

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