Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01011 (long intergenic non-protein coding RNA 1011)

Identity

Alias_symbol (synonym)DKFZp686I15217
Other alias-
HGNC (Hugo) LINC01011
LocusID (NCBI) 401232
Atlas_Id 65732
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 2988699 and ends at 2991167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01011   33812
Cards
Entrez_Gene (NCBI)LINC01011  401232  long intergenic non-protein coding RNA 1011
Aliases
GeneCards (Weizmann)LINC01011
Ensembl hg19 (Hinxton)ENSG00000244041 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244041 [Gene_View]  ENSG00000244041 [Sequence]  chr6:2988699-2991167 [Contig_View]  LINC01011 [Vega]
ICGC DataPortalENSG00000244041
TCGA cBioPortalLINC01011
AceView (NCBI)LINC01011
Genatlas (Paris)LINC01011
WikiGenes401232
SOURCE (Princeton)LINC01011
Genetics Home Reference (NIH)LINC01011
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01011  -     chr6:2988699-2991167 +  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01011  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01011 - 6p25.2 [CytoView hg19]  LINC01011 - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBILINC01011 [Mapview hg19]  LINC01011 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055096 AK123663 BC108683 BC137372 BQ025114
RefSeq transcript (Entrez)NM_207495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01011
Cluster EST : UnigeneHs.720158 [ NCBI ]
CGAP (NCI)Hs.720158
Alternative Splicing GalleryENSG00000244041
Gene ExpressionLINC01011 [ NCBI-GEO ]   LINC01011 [ EBI - ARRAY_EXPRESS ]   LINC01011 [ SEEK ]   LINC01011 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01011 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401232
GTEX Portal (Tissue expression)LINC01011
Human Protein AtlasENSG00000244041-LINC01011 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01011
DMDM Disease mutations401232
Blocks (Seattle)LINC01011
Human Protein Atlas [tissue]ENSG00000244041-LINC01011 [tissue]
HPRD16819
IPIIPI00423381   IPI00289385   
Protein Interaction databases
FunCoupENSG00000244041
BioGRIDLINC01011
STRING (EMBL)LINC01011
ZODIACLINC01011
Ontologies - Pathways
Huge Navigator LINC01011 [HugePedia]
snp3D : Map Gene to Disease401232
BioCentury BCIQLINC01011
ClinGenLINC01011
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401232
Clinical trialLINC01011
Miscellaneous
canSAR (ICR)LINC01011 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01011
EVEXLINC01011
GoPubMedLINC01011
iHOPLINC01011
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:54 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.