Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01012 (long intergenic non-protein coding RNA 1012)

Identity

Other alias-
HGNC (Hugo) LINC01012
LocusID (NCBI) 100507173
Atlas_Id 65733
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27694079 and ends at 27709157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01012   48986
Cards
Entrez_Gene (NCBI)LINC01012  100507173  long intergenic non-protein coding RNA 1012
Aliases
GeneCards (Weizmann)LINC01012
Ensembl hg19 (Hinxton)ENSG00000281706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281706 [Gene_View]  ENSG00000281706 [Sequence]  chr6:27694079-27709157 [Contig_View]  LINC01012 [Vega]
ICGC DataPortalENSG00000281706
TCGA cBioPortalLINC01012
AceView (NCBI)LINC01012
Genatlas (Paris)LINC01012
WikiGenes100507173
SOURCE (Princeton)LINC01012
Genetics Home Reference (NIH)LINC01012
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01012  -     chr6:27694079-27709157 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01012  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01012 - 6p22.1 [CytoView hg19]  LINC01012 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01012 [Mapview hg19]  LINC01012 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL120625 BC035101 BI771077
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01012
Cluster EST : UnigeneHs.733567 [ NCBI ]
CGAP (NCI)Hs.733567
Alternative Splicing GalleryENSG00000281706
Gene ExpressionLINC01012 [ NCBI-GEO ]   LINC01012 [ EBI - ARRAY_EXPRESS ]   LINC01012 [ SEEK ]   LINC01012 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01012 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507173
GTEX Portal (Tissue expression)LINC01012
Human Protein AtlasENSG00000281706-LINC01012 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01012
DMDM Disease mutations100507173
Blocks (Seattle)LINC01012
Human Protein Atlas [tissue]ENSG00000281706-LINC01012 [tissue]
Protein Interaction databases
FunCoupENSG00000281706
BioGRIDLINC01012
STRING (EMBL)LINC01012
ZODIACLINC01012
Ontologies - Pathways
Huge Navigator LINC01012 [HugePedia]
snp3D : Map Gene to Disease100507173
BioCentury BCIQLINC01012
ClinGenLINC01012
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507173
Clinical trialLINC01012
Miscellaneous
canSAR (ICR)LINC01012 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01012
EVEXLINC01012
GoPubMedLINC01012
iHOPLINC01012
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:54 CEST 2018

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