Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01015 (long intergenic non-protein coding RNA 1015)

Identity

Other alias-
HGNC (Hugo) LINC01015
LocusID (NCBI) 100507362
Atlas_Id 65736
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29529406 and ends at 29533568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01015   48988
Cards
Entrez_Gene (NCBI)LINC01015  100507362  long intergenic non-protein coding RNA 1015
Aliases
GeneCards (Weizmann)LINC01015
Ensembl hg19 (Hinxton)ENSG00000224582 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224582 [Gene_View]  ENSG00000224582 [Sequence]  chr6:29529406-29533568 [Contig_View]  LINC01015 [Vega]
ICGC DataPortalENSG00000224582
TCGA cBioPortalLINC01015
AceView (NCBI)LINC01015
Genatlas (Paris)LINC01015
WikiGenes100507362
SOURCE (Princeton)LINC01015
Genetics Home Reference (NIH)LINC01015
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01015  -     chr6:29529406-29533568 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01015  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01015 - 6p22.1 [CytoView hg19]  LINC01015 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01015 [Mapview hg19]  LINC01015 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097713 AK126097 CD358111 DB050954 DB052894
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LINC01015
Cluster EST : UnigeneHs.99161 [ NCBI ]
CGAP (NCI)Hs.99161
Alternative Splicing GalleryENSG00000224582
Gene ExpressionLINC01015 [ NCBI-GEO ]   LINC01015 [ EBI - ARRAY_EXPRESS ]   LINC01015 [ SEEK ]   LINC01015 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01015 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507362
GTEX Portal (Tissue expression)LINC01015
Human Protein AtlasENSG00000224582-LINC01015 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01015
DMDM Disease mutations100507362
Blocks (Seattle)LINC01015
Human Protein Atlas [tissue]ENSG00000224582-LINC01015 [tissue]
Protein Interaction databases
FunCoupENSG00000224582
BioGRIDLINC01015
STRING (EMBL)LINC01015
ZODIACLINC01015
Ontologies - Pathways
Huge Navigator LINC01015 [HugePedia]
snp3D : Map Gene to Disease100507362
BioCentury BCIQLINC01015
ClinGenLINC01015
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507362
Clinical trialLINC01015
Miscellaneous
canSAR (ICR)LINC01015 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01015
EVEXLINC01015
GoPubMedLINC01015
iHOPLINC01015
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:55 CEST 2018

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