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LINC01016 (long intergenic non-protein coding RNA 1016)

Identity

Other alias-
HGNC (Hugo) LINC01016
LocusID (NCBI) 100507584
Atlas_Id 65737
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 33889511 and ends at 33896907 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01016   48991
Cards
Entrez_Gene (NCBI)LINC01016  100507584  long intergenic non-protein coding RNA 1016
Aliases
GeneCards (Weizmann)LINC01016
Ensembl hg19 (Hinxton)ENSG00000249346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249346 [Gene_View]  ENSG00000249346 [Sequence]  chr6:33889511-33896907 [Contig_View]  LINC01016 [Vega]
ICGC DataPortalENSG00000249346
TCGA cBioPortalLINC01016
AceView (NCBI)LINC01016
Genatlas (Paris)LINC01016
WikiGenes100507584
SOURCE (Princeton)LINC01016
Genetics Home Reference (NIH)LINC01016
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01016  -     chr6:33889511-33896907 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01016  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01016 - 6p21.31 [CytoView hg19]  LINC01016 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBILINC01016 [Mapview hg19]  LINC01016 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057709 BC034285 BC042121 CR745530
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01016
Cluster EST : UnigeneHs.547104 [ NCBI ]
CGAP (NCI)Hs.547104
Alternative Splicing GalleryENSG00000249346
Gene ExpressionLINC01016 [ NCBI-GEO ]   LINC01016 [ EBI - ARRAY_EXPRESS ]   LINC01016 [ SEEK ]   LINC01016 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01016 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507584
GTEX Portal (Tissue expression)LINC01016
Human Protein AtlasENSG00000249346-LINC01016 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01016
DMDM Disease mutations100507584
Blocks (Seattle)LINC01016
Human Protein Atlas [tissue]ENSG00000249346-LINC01016 [tissue]
Protein Interaction databases
FunCoupENSG00000249346
BioGRIDLINC01016
STRING (EMBL)LINC01016
ZODIACLINC01016
Ontologies - Pathways
Huge Navigator LINC01016 [HugePedia]
snp3D : Map Gene to Disease100507584
BioCentury BCIQLINC01016
ClinGenLINC01016
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507584
Clinical trialLINC01016
Miscellaneous
canSAR (ICR)LINC01016 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01016
EVEXLINC01016
GoPubMedLINC01016
iHOPLINC01016
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:55 CEST 2018

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