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LINC01017 (long intergenic non-protein coding RNA 1017)

Identity

Other alias-
HGNC (Hugo) LINC01017
LocusID (NCBI) 102467075
Atlas_Id 65738
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 3496372 and ends at 3504004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01017   50641
Cards
Entrez_Gene (NCBI)LINC01017  102467075  long intergenic non-protein coding RNA 1017
Aliases
GeneCards (Weizmann)LINC01017
Ensembl hg19 (Hinxton)ENSG00000250716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250716 [Gene_View]  chr5:3496372-3504004 [Contig_View]  LINC01017 [Vega]
ICGC DataPortalENSG00000250716
TCGA cBioPortalLINC01017
AceView (NCBI)LINC01017
Genatlas (Paris)LINC01017
WikiGenes102467075
SOURCE (Princeton)LINC01017
Genetics Home Reference (NIH)LINC01017
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01017  -     chr5:3496372-3504004 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01017  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01017 - 5p15.33 [CytoView hg19]  LINC01017 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBILINC01017 [Mapview hg19]  LINC01017 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ428982
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01017
Cluster EST : UnigeneHs.652949 [ NCBI ]
CGAP (NCI)Hs.652949
Alternative Splicing GalleryENSG00000250716
Gene ExpressionLINC01017 [ NCBI-GEO ]   LINC01017 [ EBI - ARRAY_EXPRESS ]   LINC01017 [ SEEK ]   LINC01017 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01017 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467075
GTEX Portal (Tissue expression)LINC01017
Human Protein AtlasENSG00000250716-LINC01017 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01017
DMDM Disease mutations102467075
Blocks (Seattle)LINC01017
Human Protein Atlas [tissue]ENSG00000250716-LINC01017 [tissue]
Protein Interaction databases
FunCoupENSG00000250716
BioGRIDLINC01017
STRING (EMBL)LINC01017
ZODIACLINC01017
Ontologies - Pathways
Huge Navigator LINC01017 [HugePedia]
snp3D : Map Gene to Disease102467075
BioCentury BCIQLINC01017
ClinGenLINC01017
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467075
Clinical trialLINC01017
Miscellaneous
canSAR (ICR)LINC01017 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01017
EVEXLINC01017
GoPubMedLINC01017
iHOPLINC01017
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:51 CET 2017

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