Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01021 (long intergenic non-protein coding RNA 1021)

Identity

Other alias-
HGNC (Hugo) LINC01021
LocusID (NCBI) 643401
Atlas_Id 65742
Location 5p14.1  [Link to chromosome band 5p14]
Location_base_pair Starts at 27472292 and ends at 27496401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC01021   48995
Cards
Entrez_Gene (NCBI)LINC01021  643401  long intergenic non-protein coding RNA 1021
Aliases
GeneCards (Weizmann)LINC01021
Ensembl hg19 (Hinxton)ENSG00000250337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250337 [Gene_View]  chr5:27472292-27496401 [Contig_View]  LINC01021 [Vega]
ICGC DataPortalENSG00000250337
TCGA cBioPortalLINC01021
AceView (NCBI)LINC01021
Genatlas (Paris)LINC01021
WikiGenes643401
SOURCE (Princeton)LINC01021
Genetics Home Reference (NIH)LINC01021
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01021  -     chr5:27472292-27496401 +  5p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01021  -     5p14.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01021 - 5p14.1 [CytoView hg19]  LINC01021 - 5p14.1 [CytoView hg38]
Mapping of homologs : NCBILINC01021 [Mapview hg19]  LINC01021 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039509 BC046201 BC101438 BC101982 BC122523
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01021
Cluster EST : UnigeneHs.533212 [ NCBI ]
CGAP (NCI)Hs.533212
Alternative Splicing GalleryENSG00000250337
Gene ExpressionLINC01021 [ NCBI-GEO ]   LINC01021 [ EBI - ARRAY_EXPRESS ]   LINC01021 [ SEEK ]   LINC01021 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01021 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643401
GTEX Portal (Tissue expression)LINC01021
Human Protein AtlasENSG00000250337-LINC01021 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01021
DMDM Disease mutations643401
Blocks (Seattle)LINC01021
Human Protein Atlas [tissue]ENSG00000250337-LINC01021 [tissue]
Protein Interaction databases
FunCoupENSG00000250337
BioGRIDLINC01021
STRING (EMBL)LINC01021
ZODIACLINC01021
Ontologies - Pathways
Huge Navigator LINC01021 [HugePedia]
snp3D : Map Gene to Disease643401
BioCentury BCIQLINC01021
ClinGenLINC01021
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643401
Clinical trialLINC01021
Miscellaneous
canSAR (ICR)LINC01021 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01021
EVEXLINC01021
GoPubMedLINC01021
iHOPLINC01021
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:25:09 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.