Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01044 (long intergenic non-protein coding RNA 1044)

Identity

Other alias-
HGNC (Hugo) LINC01044
LocusID (NCBI) 104266956
Atlas_Id 77241
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 112322567 and ends at 112331225 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01044   49032
Cards
Entrez_Gene (NCBI)LINC01044  104266956  long intergenic non-protein coding RNA 1044
Aliases
GeneCards (Weizmann)LINC01044
Ensembl hg19 (Hinxton)ENSG00000223626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223626 [Gene_View]  chr13:112322567-112331225 [Contig_View]  LINC01044 [Vega]
ICGC DataPortalENSG00000223626
TCGA cBioPortalLINC01044
AceView (NCBI)LINC01044
Genatlas (Paris)LINC01044
WikiGenes104266956
SOURCE (Princeton)LINC01044
Genetics Home Reference (NIH)LINC01044
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01044  -     chr13:112322567-112331225 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01044  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblLINC01044 - 13q34 [CytoView hg19]  LINC01044 - 13q34 [CytoView hg38]
Mapping of homologs : NCBILINC01044 [Mapview hg19]  LINC01044 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG722997
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_187592
Consensus coding sequences : CCDS (NCBI)LINC01044
Alternative Splicing GalleryENSG00000223626
Gene ExpressionLINC01044 [ NCBI-GEO ]   LINC01044 [ EBI - ARRAY_EXPRESS ]   LINC01044 [ SEEK ]   LINC01044 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01044 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104266956
GTEX Portal (Tissue expression)LINC01044
Human Protein AtlasENSG00000223626-LINC01044 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01044
DMDM Disease mutations104266956
Blocks (Seattle)LINC01044
Human Protein Atlas [tissue]ENSG00000223626-LINC01044 [tissue]
Protein Interaction databases
FunCoupENSG00000223626
BioGRIDLINC01044
STRING (EMBL)LINC01044
ZODIACLINC01044
Ontologies - Pathways
Huge Navigator LINC01044 [HugePedia]
snp3D : Map Gene to Disease104266956
BioCentury BCIQLINC01044
ClinGenLINC01044
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104266956
Clinical trialLINC01044
Miscellaneous
canSAR (ICR)LINC01044 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01044
EVEXLINC01044
GoPubMedLINC01044
iHOPLINC01044
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.