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LINC01050 (long intergenic non-protein coding RNA 1050)

Identity

Other alias-
HGNC (Hugo) LINC01050
LocusID (NCBI) 103689845
Atlas_Id 65756
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 42810366 and ends at 42812562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01050   49044
Cards
Entrez_Gene (NCBI)LINC01050  103689845  long intergenic non-protein coding RNA 1050
Aliases
GeneCards (Weizmann)LINC01050
Ensembl hg19 (Hinxton)ENSG00000271216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271216 [Gene_View]  chr13:42810366-42812562 [Contig_View]  LINC01050 [Vega]
ICGC DataPortalENSG00000271216
TCGA cBioPortalLINC01050
AceView (NCBI)LINC01050
Genatlas (Paris)LINC01050
WikiGenes103689845
SOURCE (Princeton)LINC01050
Genetics Home Reference (NIH)LINC01050
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01050  -     chr13:42810366-42812562 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01050  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblLINC01050 - 13q14.11 [CytoView hg19]  LINC01050 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBILINC01050 [Mapview hg19]  LINC01050 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CD367180
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01050
Cluster EST : UnigeneHs.422131 [ NCBI ]
CGAP (NCI)Hs.422131
Alternative Splicing GalleryENSG00000271216
Gene ExpressionLINC01050 [ NCBI-GEO ]   LINC01050 [ EBI - ARRAY_EXPRESS ]   LINC01050 [ SEEK ]   LINC01050 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01050 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103689845
GTEX Portal (Tissue expression)LINC01050
Human Protein AtlasENSG00000271216-LINC01050 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01050
DMDM Disease mutations103689845
Blocks (Seattle)LINC01050
Human Protein Atlas [tissue]ENSG00000271216-LINC01050 [tissue]
Protein Interaction databases
FunCoupENSG00000271216
BioGRIDLINC01050
STRING (EMBL)LINC01050
ZODIACLINC01050
Ontologies - Pathways
Huge Navigator LINC01050 [HugePedia]
snp3D : Map Gene to Disease103689845
BioCentury BCIQLINC01050
ClinGenLINC01050
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103689845
Clinical trialLINC01050
Miscellaneous
canSAR (ICR)LINC01050 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01050
EVEXLINC01050
GoPubMedLINC01050
iHOPLINC01050
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:38:07 CET 2017

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