Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01078 (long intergenic non-protein coding RNA 1078)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01078
LocusID (NCBI) 106144536
Atlas_Id 77734
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75240588 and ends at 75252012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01078   49121
Cards
Entrez_Gene (NCBI)LINC01078    long intergenic non-protein coding RNA 1078
Aliases
GeneCards (Weizmann)LINC01078
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:75240588-75252012 [Contig_View]  LINC01078 [Vega]
TCGA cBioPortalLINC01078
AceView (NCBI)LINC01078
Genatlas (Paris)LINC01078
SOURCE (Princeton)LINC01078
Genetics Home Reference (NIH)LINC01078
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01078  -     chr13:75240588-75252012 +  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01078  -     13q22.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01078 - 13q22.2 [CytoView hg19]  LINC01078 - 13q22.2 [CytoView hg38]
Genome Data Viewer NCBILINC01078 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA442466
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01078
Gene ExpressionLINC01078 [ NCBI-GEO ]   LINC01078 [ EBI - ARRAY_EXPRESS ]   LINC01078 [ SEEK ]   LINC01078 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01078 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01078 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)106144536
GTEX Portal (Tissue expression)LINC01078
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01078
Protein Interaction databases
BioGRIDLINC01078
STRING (EMBL)LINC01078
ZODIACLINC01078
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC01078
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:57:06 CEST 2021

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