Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01080 (long intergenic non-protein coding RNA 1080)


Alias (NCBI)TCONS_00021856
HGNC (Hugo) LINC01080
HGNC Alias symbTCONS_00021856
LocusID (NCBI) 101515984
Atlas_Id 56888
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 80011077 and ends at 80026663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01080   49123
Entrez_Gene (NCBI)LINC01080    long intergenic non-protein coding RNA 1080
GeneCards (Weizmann)LINC01080
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:80011077-80026663 [Contig_View]  LINC01080 [Vega]
TCGA cBioPortalLINC01080
AceView (NCBI)LINC01080
Genatlas (Paris)LINC01080
SOURCE (Princeton)LINC01080
Genetics Home Reference (NIH)LINC01080
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01080  -     chr13:80011077-80026663 +  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01080  -     13q31.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01080 - 13q31.1 [CytoView hg19]  LINC01080 - 13q31.1 [CytoView hg38]
Genome Data Viewer NCBILINC01080 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)DA225206 DA346981
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01080
Gene ExpressionLINC01080 [ NCBI-GEO ]   LINC01080 [ EBI - ARRAY_EXPRESS ]   LINC01080 [ SEEK ]   LINC01080 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01080 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01080 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101515984
GTEX Portal (Tissue expression)LINC01080
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01080
Protein Interaction databases
Ontologies - Pathways
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:16:12 CEST 2021

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