Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01080 (long intergenic non-protein coding RNA 1080)

Identity

Other aliasTCONS_00021856
HGNC (Hugo) LINC01080
LocusID (NCBI) 101515984
Atlas_Id 56888
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 80011077 and ends at 80026663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01080   49123
Cards
Entrez_Gene (NCBI)LINC01080  101515984  long intergenic non-protein coding RNA 1080
AliasesTCONS_00021856
GeneCards (Weizmann)LINC01080
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:80011077-80026663 [Contig_View]  LINC01080 [Vega]
TCGA cBioPortalLINC01080
AceView (NCBI)LINC01080
Genatlas (Paris)LINC01080
WikiGenes101515984
SOURCE (Princeton)LINC01080
Genetics Home Reference (NIH)LINC01080
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01080  -     chr13:80011077-80026663 +  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01080  -     13q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01080 - 13q31.1 [CytoView hg19]  LINC01080 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01080 [Mapview hg19]  LINC01080 [Mapview hg38]
OMIM615230   
Gene and transcription
Genbank (Entrez)DA225206 DA346981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01080
Cluster EST : UnigeneHs.569290 [ NCBI ]
CGAP (NCI)Hs.569290
Gene ExpressionLINC01080 [ NCBI-GEO ]   LINC01080 [ EBI - ARRAY_EXPRESS ]   LINC01080 [ SEEK ]   LINC01080 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01080 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101515984
GTEX Portal (Tissue expression)LINC01080
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01080
DMDM Disease mutations101515984
Blocks (Seattle)LINC01080
Protein Interaction databases
BioGRIDLINC01080
STRING (EMBL)LINC01080
ZODIACLINC01080
Ontologies - Pathways
Huge Navigator LINC01080 [HugePedia]
snp3D : Map Gene to Disease101515984
BioCentury BCIQLINC01080
ClinGenLINC01080
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101515984
Clinical trialLINC01080
Miscellaneous
canSAR (ICR)LINC01080 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01080
EVEXLINC01080
GoPubMedLINC01080
iHOPLINC01080
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:43:29 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.