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LINC01082 (long intergenic non-protein coding RNA 1082)

Identity

Alias_symbol (synonym)TCONS_00024492
Other alias
HGNC (Hugo) LINC01082
LocusID (NCBI) 100506542
Atlas_Id 65771
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86196181 and ends at 86199718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01082   49125
Cards
Entrez_Gene (NCBI)LINC01082  100506542  long intergenic non-protein coding RNA 1082
AliasesTCONS_00024492
GeneCards (Weizmann)LINC01082
Ensembl hg19 (Hinxton)ENSG00000269186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269186 [Gene_View]  chr16:86196181-86199718 [Contig_View]  LINC01082 [Vega]
ICGC DataPortalENSG00000269186
TCGA cBioPortalLINC01082
AceView (NCBI)LINC01082
Genatlas (Paris)LINC01082
WikiGenes100506542
SOURCE (Princeton)LINC01082
Genetics Home Reference (NIH)LINC01082
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01082  -     chr16:86196181-86199718 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01082  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01082 - 16q24.1 [CytoView hg19]  LINC01082 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01082 [Mapview hg19]  LINC01082 [Mapview hg38]
OMIM614978   
Gene and transcription
Genbank (Entrez)AA399680 AI676062 BP423579
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01082
Cluster EST : UnigeneHs.111902 [ NCBI ]
CGAP (NCI)Hs.111902
Alternative Splicing GalleryENSG00000269186
Gene ExpressionLINC01082 [ NCBI-GEO ]   LINC01082 [ EBI - ARRAY_EXPRESS ]   LINC01082 [ SEEK ]   LINC01082 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01082 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506542
GTEX Portal (Tissue expression)LINC01082
Human Protein AtlasENSG00000269186-LINC01082 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01082
DMDM Disease mutations100506542
Blocks (Seattle)LINC01082
Human Protein Atlas [tissue]ENSG00000269186-LINC01082 [tissue]
Protein Interaction databases
FunCoupENSG00000269186
BioGRIDLINC01082
STRING (EMBL)LINC01082
ZODIACLINC01082
Ontologies - Pathways
Huge Navigator LINC01082 [HugePedia]
snp3D : Map Gene to Disease100506542
BioCentury BCIQLINC01082
ClinGenLINC01082
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506542
Clinical trialLINC01082
Miscellaneous
canSAR (ICR)LINC01082 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01082
EVEXLINC01082
GoPubMedLINC01082
iHOPLINC01082
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:28 CET 2017

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