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LINC01085 (long intergenic non-protein coding RNA 1085)

Identity

Other alias-
HGNC (Hugo) LINC01085
LocusID (NCBI) 152742
Atlas_Id 65772
Location 4p15.33  [Link to chromosome band 4p15]
Location_base_pair Starts at 14111968 and ends at 14140052 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01085   27198
Cards
Entrez_Gene (NCBI)LINC01085  152742  long intergenic non-protein coding RNA 1085
Aliases
GeneCards (Weizmann)LINC01085
Ensembl hg19 (Hinxton)ENSG00000248698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248698 [Gene_View]  chr4:14111968-14140052 [Contig_View]  LINC01085 [Vega]
ICGC DataPortalENSG00000248698
TCGA cBioPortalLINC01085
AceView (NCBI)LINC01085
Genatlas (Paris)LINC01085
WikiGenes152742
SOURCE (Princeton)LINC01085
Genetics Home Reference (NIH)LINC01085
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01085  -     chr4:14111968-14140052 +  4p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01085  -     4p15.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01085 - 4p15.33 [CytoView hg19]  LINC01085 - 4p15.33 [CytoView hg38]
Mapping of homologs : NCBILINC01085 [Mapview hg19]  LINC01085 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI031657 AI472966 AK055518 AK311310 BC121142
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01085
Cluster EST : UnigeneHs.135435 [ NCBI ]
CGAP (NCI)Hs.135435
Alternative Splicing GalleryENSG00000248698
Gene ExpressionLINC01085 [ NCBI-GEO ]   LINC01085 [ EBI - ARRAY_EXPRESS ]   LINC01085 [ SEEK ]   LINC01085 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01085 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)152742
GTEX Portal (Tissue expression)LINC01085
Human Protein AtlasENSG00000248698-LINC01085 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01085
DMDM Disease mutations152742
Blocks (Seattle)LINC01085
Human Protein Atlas [tissue]ENSG00000248698-LINC01085 [tissue]
Protein Interaction databases
FunCoupENSG00000248698
BioGRIDLINC01085
STRING (EMBL)LINC01085
ZODIACLINC01085
Ontologies - Pathways
Huge Navigator LINC01085 [HugePedia]
snp3D : Map Gene to Disease152742
BioCentury BCIQLINC01085
ClinGenLINC01085
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152742
Clinical trialLINC01085
Miscellaneous
canSAR (ICR)LINC01085 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01085
EVEXLINC01085
GoPubMedLINC01085
iHOPLINC01085
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:08 CET 2017

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