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LINC01089 (long intergenic non-protein coding RNA 1089)

Identity

Other aliasLIMT
HGNC (Hugo) LINC01089
LocusID (NCBI) 338799
Atlas_Id 57204
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 121795267 and ends at 121802946 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01089   27886
Cards
Entrez_Gene (NCBI)LINC01089  338799  long intergenic non-protein coding RNA 1089
AliasesLIMT
GeneCards (Weizmann)LINC01089
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr12:121795267-121802946 [Contig_View]  LINC01089 [Vega]
TCGA cBioPortalLINC01089
AceView (NCBI)LINC01089
Genatlas (Paris)LINC01089
WikiGenes338799
SOURCE (Princeton)LINC01089
Genetics Home Reference (NIH)LINC01089
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01089  -     chr12:121795267-121802946 -  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01089  -     13q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01089 - 13q31.1 [CytoView hg19]  LINC01089 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01089 [Mapview hg19]  LINC01089 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094482 AK095700 AK096174 AK311480 BC038786
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01089
Cluster EST : UnigeneHs.524804 [ NCBI ]
CGAP (NCI)Hs.524804
Gene ExpressionLINC01089 [ NCBI-GEO ]   LINC01089 [ EBI - ARRAY_EXPRESS ]   LINC01089 [ SEEK ]   LINC01089 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01089 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338799
GTEX Portal (Tissue expression)LINC01089
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01089
DMDM Disease mutations338799
Blocks (Seattle)LINC01089
IPIIPI00167717   
Protein Interaction databases
BioGRIDLINC01089
STRING (EMBL)LINC01089
ZODIACLINC01089
Ontologies - Pathways
Huge Navigator LINC01089 [HugePedia]
snp3D : Map Gene to Disease338799
BioCentury BCIQLINC01089
ClinGenLINC01089
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338799
Clinical trialLINC01089
Miscellaneous
canSAR (ICR)LINC01089 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01089
EVEXLINC01089
GoPubMedLINC01089
iHOPLINC01089
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:11:18 CEST 2018

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