Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01107 (long intergenic non-protein coding RNA 1107)

Identity

Other alias-
HGNC (Hugo) LINC01107
LocusID (NCBI) 151171
Atlas_Id 65791
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 238510690 and ends at 238555499 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01107   49229
Cards
Entrez_Gene (NCBI)LINC01107  151171  long intergenic non-protein coding RNA 1107
Aliases
GeneCards (Weizmann)LINC01107
Ensembl hg19 (Hinxton)ENSG00000225493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225493 [Gene_View]  chr2:238510690-238555499 [Contig_View]  LINC01107 [Vega]
ICGC DataPortalENSG00000225493
TCGA cBioPortalLINC01107
AceView (NCBI)LINC01107
Genatlas (Paris)LINC01107
WikiGenes151171
SOURCE (Princeton)LINC01107
Genetics Home Reference (NIH)LINC01107
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01107  -     chr2:238510690-238555499 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01107  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01107 - 2q37.3 [CytoView hg19]  LINC01107 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBILINC01107 [Mapview hg19]  LINC01107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057376 BC101453 BC101454 BC101455 BC101456
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01107
Cluster EST : UnigeneHs.652076 [ NCBI ]
CGAP (NCI)Hs.652076
Alternative Splicing GalleryENSG00000225493
Gene ExpressionLINC01107 [ NCBI-GEO ]   LINC01107 [ EBI - ARRAY_EXPRESS ]   LINC01107 [ SEEK ]   LINC01107 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)151171
GTEX Portal (Tissue expression)LINC01107
Human Protein AtlasENSG00000225493-LINC01107 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01107
DMDM Disease mutations151171
Blocks (Seattle)LINC01107
Human Protein Atlas [tissue]ENSG00000225493-LINC01107 [tissue]
IPIIPI00984210   
Protein Interaction databases
FunCoupENSG00000225493
BioGRIDLINC01107
STRING (EMBL)LINC01107
ZODIACLINC01107
Ontologies - Pathways
Huge Navigator LINC01107 [HugePedia]
snp3D : Map Gene to Disease151171
BioCentury BCIQLINC01107
ClinGenLINC01107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151171
Clinical trialLINC01107
Miscellaneous
canSAR (ICR)LINC01107 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01107
EVEXLINC01107
GoPubMedLINC01107
iHOPLINC01107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:32 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.