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LINC01108 (long intergenic non-protein coding RNA 1108)

Identity

Alias_symbol (synonym)LncRNA-ES1
Other alias
HGNC (Hugo) LINC01108
LocusID (NCBI) 102216342
Atlas_Id 65792
Location 6p23  [Link to chromosome band 6p23]
Location_base_pair Starts at 14280127 and ends at 14285454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01108   49234
Cards
Entrez_Gene (NCBI)LINC01108  102216342  long intergenic non-protein coding RNA 1108
AliasesLncRNA-ES1
GeneCards (Weizmann)LINC01108
Ensembl hg19 (Hinxton)ENSG00000226673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226673 [Gene_View]  ENSG00000226673 [Sequence]  chr6:14280127-14285454 [Contig_View]  LINC01108 [Vega]
ICGC DataPortalENSG00000226673
TCGA cBioPortalLINC01108
AceView (NCBI)LINC01108
Genatlas (Paris)LINC01108
WikiGenes102216342
SOURCE (Princeton)LINC01108
Genetics Home Reference (NIH)LINC01108
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01108  -     chr6:14280127-14285454 -  6p23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01108  -     6p23   [Description]    (hg19-Feb_2009)
EnsemblLINC01108 - 6p23 [CytoView hg19]  LINC01108 - 6p23 [CytoView hg38]
Mapping of homologs : NCBILINC01108 [Mapview hg19]  LINC01108 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056826 CX756078
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01108
Cluster EST : UnigeneHs.563409 [ NCBI ]
CGAP (NCI)Hs.563409
Alternative Splicing GalleryENSG00000226673
Gene ExpressionLINC01108 [ NCBI-GEO ]   LINC01108 [ EBI - ARRAY_EXPRESS ]   LINC01108 [ SEEK ]   LINC01108 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01108 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102216342
GTEX Portal (Tissue expression)LINC01108
Human Protein AtlasENSG00000226673-LINC01108 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01108
DMDM Disease mutations102216342
Blocks (Seattle)LINC01108
Human Protein Atlas [tissue]ENSG00000226673-LINC01108 [tissue]
Protein Interaction databases
FunCoupENSG00000226673
BioGRIDLINC01108
STRING (EMBL)LINC01108
ZODIACLINC01108
Ontologies - Pathways
Huge Navigator LINC01108 [HugePedia]
snp3D : Map Gene to Disease102216342
BioCentury BCIQLINC01108
ClinGenLINC01108
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102216342
Clinical trialLINC01108
Miscellaneous
canSAR (ICR)LINC01108 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01108
EVEXLINC01108
GoPubMedLINC01108
iHOPLINC01108
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:54:10 CEST 2018

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