Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01116 (long intergenic non-protein coding RNA 1116)


HGNC (Hugo) LINC01116
HGNC Alias symbTALNEC2
HGNC Alias nameTumor associated lncRNA expressed in chromosome 2
LocusID (NCBI) 375295
Atlas_Id 57525
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176629581 and ends at 176637574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01116   49259
Entrez_Gene (NCBI)LINC01116    long intergenic non-protein coding RNA 1116
GeneCards (Weizmann)LINC01116
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr2:176629581-176637574 [Contig_View]  LINC01116 [Vega]
TCGA cBioPortalLINC01116
AceView (NCBI)LINC01116
Genatlas (Paris)LINC01116
SOURCE (Princeton)LINC01116
Genetics Home Reference (NIH)LINC01116
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01116  -     chr2:176629581-176637574 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01116  -     2q31.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01116 - 2q31.1 [CytoView hg19]  LINC01116 - 2q31.1 [CytoView hg38]
Genome Data Viewer NCBILINC01116 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI766085 BC013438 BC013588 BE908176 BF029957
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01116
Gene ExpressionLINC01116 [ NCBI-GEO ]   LINC01116 [ EBI - ARRAY_EXPRESS ]   LINC01116 [ SEEK ]   LINC01116 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01116 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01116 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375295
GTEX Portal (Tissue expression)LINC01116
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01116
Protein Interaction databases
Ontologies - Pathways
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:16:13 CEST 2021

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