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LINC01117 (long intergenic non-protein coding RNA 1117)

Identity

Other alias-
HGNC (Hugo) LINC01117
LocusID (NCBI) 102724224
Atlas_Id 65799
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176637754 and ends at 176655958 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01117   49260
Cards
Entrez_Gene (NCBI)LINC01117  102724224  long intergenic non-protein coding RNA 1117
Aliases
GeneCards (Weizmann)LINC01117
Ensembl hg19 (Hinxton)ENSG00000224577 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224577 [Gene_View]  chr2:176637754-176655958 [Contig_View]  LINC01117 [Vega]
ICGC DataPortalENSG00000224577
TCGA cBioPortalLINC01117
AceView (NCBI)LINC01117
Genatlas (Paris)LINC01117
WikiGenes102724224
SOURCE (Princeton)LINC01117
Genetics Home Reference (NIH)LINC01117
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01117  -     chr2:176637754-176655958 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01117  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01117 - 2q31.1 [CytoView hg19]  LINC01117 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01117 [Mapview hg19]  LINC01117 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX379562
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01117
Cluster EST : UnigeneHs.663125 [ NCBI ]
CGAP (NCI)Hs.663125
Alternative Splicing GalleryENSG00000224577
Gene ExpressionLINC01117 [ NCBI-GEO ]   LINC01117 [ EBI - ARRAY_EXPRESS ]   LINC01117 [ SEEK ]   LINC01117 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724224
GTEX Portal (Tissue expression)LINC01117
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01117
DMDM Disease mutations102724224
Blocks (Seattle)LINC01117
Human Protein AtlasENSG00000224577
Protein Interaction databases
FunCoupENSG00000224577
BioGRIDLINC01117
STRING (EMBL)LINC01117
ZODIACLINC01117
Ontologies - Pathways
Huge Navigator LINC01117 [HugePedia]
snp3D : Map Gene to Disease102724224
BioCentury BCIQLINC01117
ClinGenLINC01117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724224
Clinical trialLINC01117
Miscellaneous
canSAR (ICR)LINC01117 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01117
EVEXLINC01117
GoPubMedLINC01117
iHOPLINC01117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:58:10 CEST 2017

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