Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01122 (long intergenic non-protein coding RNA 1122)

Identity

Alias_symbol (synonym)FLJ30838
Other alias-
HGNC (Hugo) LINC01122
LocusID (NCBI) 400955
Atlas_Id 65804
Location 2p16.1  [Link to chromosome band 2p16]
Location_base_pair Starts at 58520753 and ends at 59063766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01122   49267
Cards
Entrez_Gene (NCBI)LINC01122  400955  long intergenic non-protein coding RNA 1122
Aliases
GeneCards (Weizmann)LINC01122
Ensembl hg19 (Hinxton)ENSG00000233723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233723 [Gene_View]  chr2:58520753-59063766 [Contig_View]  LINC01122 [Vega]
ICGC DataPortalENSG00000233723
TCGA cBioPortalLINC01122
AceView (NCBI)LINC01122
Genatlas (Paris)LINC01122
WikiGenes400955
SOURCE (Princeton)LINC01122
Genetics Home Reference (NIH)LINC01122
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01122  -     chr2:58520753-59063766 +  2p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01122  -     2p16.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01122 - 2p16.1 [CytoView hg19]  LINC01122 - 2p16.1 [CytoView hg38]
Mapping of homologs : NCBILINC01122 [Mapview hg19]  LINC01122 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055400 AL534733 AL832565
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01122
Cluster EST : UnigeneHs.503210 [ NCBI ]
CGAP (NCI)Hs.503210
Alternative Splicing GalleryENSG00000233723
Gene ExpressionLINC01122 [ NCBI-GEO ]   LINC01122 [ EBI - ARRAY_EXPRESS ]   LINC01122 [ SEEK ]   LINC01122 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01122 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400955
GTEX Portal (Tissue expression)LINC01122
Human Protein AtlasENSG00000233723-LINC01122 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01122
DMDM Disease mutations400955
Blocks (Seattle)LINC01122
Human Protein Atlas [tissue]ENSG00000233723-LINC01122 [tissue]
Protein Interaction databases
FunCoupENSG00000233723
BioGRIDLINC01122
STRING (EMBL)LINC01122
ZODIACLINC01122
Ontologies - Pathways
Huge Navigator LINC01122 [HugePedia]
snp3D : Map Gene to Disease400955
BioCentury BCIQLINC01122
ClinGenLINC01122
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400955
Clinical trialLINC01122
Miscellaneous
canSAR (ICR)LINC01122 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01122
EVEXLINC01122
GoPubMedLINC01122
iHOPLINC01122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:35 CET 2017

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