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LINC01138 (long intergenic non-protein coding RNA 1138)

Identity

Alias_namesLINC00875
long intergenic non-protein coding RNA 875
Alias_symbol (synonym)FLJ39739
Other alias
HGNC (Hugo) LINC01138
LocusID (NCBI) 388685
Atlas_Id 65816
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 147905098 and ends at 147907503 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01138   49454
Cards
Entrez_Gene (NCBI)LINC01138  388685  long intergenic non-protein coding RNA 1138
AliasesLINC00875
GeneCards (Weizmann)LINC01138
Ensembl hg19 (Hinxton)ENSG00000274020 [Gene_View]  chr1:147905098-147907503 [Contig_View]  LINC01138 [Vega]
Ensembl hg38 (Hinxton)ENSG00000274020 [Gene_View]  chr1:147905098-147907503 [Contig_View]  LINC01138 [Vega]
ICGC DataPortalENSG00000274020
TCGA cBioPortalLINC01138
AceView (NCBI)LINC01138
Genatlas (Paris)LINC01138
WikiGenes388685
SOURCE (Princeton)LINC01138
Genetics Home Reference (NIH)LINC01138
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01138  -     chr1:147905098-147907503 -  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01138  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblLINC01138 - 1q21.2 [CytoView hg19]  LINC01138 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01138 [Mapview hg19]  LINC01138 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096104 AK097058 AK309393 AK310056 AK310186
RefSeq transcript (Entrez)NM_207400
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LINC01138
Cluster EST : UnigeneHs.745431 [ NCBI ]
CGAP (NCI)Hs.745431
Alternative Splicing GalleryENSG00000274020
Gene ExpressionLINC01138 [ NCBI-GEO ]   LINC01138 [ EBI - ARRAY_EXPRESS ]   LINC01138 [ SEEK ]   LINC01138 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388685
GTEX Portal (Tissue expression)LINC01138
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01138
DMDM Disease mutations388685
Blocks (Seattle)LINC01138
Human Protein AtlasENSG00000274020
HPRD13438
IPIIPI00397795   
Protein Interaction databases
FunCoupENSG00000274020
BioGRIDLINC01138
STRING (EMBL)LINC01138
ZODIACLINC01138
Ontologies - Pathways
Huge Navigator LINC01138 [HugePedia]
snp3D : Map Gene to Disease388685
BioCentury BCIQLINC01138
ClinGenLINC01138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388685
Clinical trialLINC01138
Miscellaneous
canSAR (ICR)LINC01138 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01138
EVEXLINC01138
GoPubMedLINC01138
iHOPLINC01138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:13:10 CET 2017

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