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LINC01140 (long intergenic non-protein coding RNA 1140)

Identity

Alias_symbol (synonym)FLJ41676
Other alias-
HGNC (Hugo) LINC01140
LocusID (NCBI) 339524
Atlas_Id 65818
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 87132003 and ends at 87136669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01140   27922
Cards
Entrez_Gene (NCBI)LINC01140  339524  long intergenic non-protein coding RNA 1140
Aliases
GeneCards (Weizmann)LINC01140
Ensembl hg19 (Hinxton)ENSG00000267272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267272 [Gene_View]  chr1:87132003-87136669 [Contig_View]  LINC01140 [Vega]
ICGC DataPortalENSG00000267272
TCGA cBioPortalLINC01140
AceView (NCBI)LINC01140
Genatlas (Paris)LINC01140
WikiGenes339524
SOURCE (Princeton)LINC01140
Genetics Home Reference (NIH)LINC01140
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01140  -     chr1:87132003-87136669 +  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01140  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01140 - 1p22.3 [CytoView hg19]  LINC01140 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBILINC01140 [Mapview hg19]  LINC01140 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833352 BC030523 BC041867 BC126240 BC132861
RefSeq transcript (Entrez)NM_207357
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01140
Cluster EST : UnigeneHs.306423 [ NCBI ]
CGAP (NCI)Hs.306423
Alternative Splicing GalleryENSG00000267272
Gene ExpressionLINC01140 [ NCBI-GEO ]   LINC01140 [ EBI - ARRAY_EXPRESS ]   LINC01140 [ SEEK ]   LINC01140 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339524
GTEX Portal (Tissue expression)LINC01140
Human Protein AtlasENSG00000267272-LINC01140 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01140
DMDM Disease mutations339524
Blocks (Seattle)LINC01140
Human Protein Atlas [tissue]ENSG00000267272-LINC01140 [tissue]
HPRD14169
IPIIPI00410433   
Protein Interaction databases
FunCoupENSG00000267272
BioGRIDLINC01140
STRING (EMBL)LINC01140
ZODIACLINC01140
Ontologies - Pathways
Huge Navigator LINC01140 [HugePedia]
snp3D : Map Gene to Disease339524
BioCentury BCIQLINC01140
ClinGenLINC01140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339524
Clinical trialLINC01140
Miscellaneous
canSAR (ICR)LINC01140 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01140
EVEXLINC01140
GoPubMedLINC01140
iHOPLINC01140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:52 CET 2017

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