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LINC01149 (long intergenic non-protein coding RNA 1149)

Identity

Alias_symbol (synonym)XXbac-BPG181B23.4
Other alias-
HGNC (Hugo) LINC01149
LocusID (NCBI) 101929111
Atlas_Id 79210
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31441667 and ends at 31446973 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01149   39757
Cards
Entrez_Gene (NCBI)LINC01149  101929111  long intergenic non-protein coding RNA 1149
Aliases
GeneCards (Weizmann)LINC01149
Ensembl hg19 (Hinxton)ENSG00000230174 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230174 [Gene_View]  ENSG00000230174 [Sequence]  chr6:31441667-31446973 [Contig_View]  LINC01149 [Vega]
ICGC DataPortalENSG00000230174
TCGA cBioPortalLINC01149
AceView (NCBI)LINC01149
Genatlas (Paris)LINC01149
WikiGenes101929111
SOURCE (Princeton)LINC01149
Genetics Home Reference (NIH)LINC01149
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01149  -     chr6:31441667-31446973 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01149  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01149 - 6p21.33 [CytoView hg19]  LINC01149 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILINC01149 [Mapview hg19]  LINC01149 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039328
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01149
Cluster EST : UnigeneHs.686866 [ NCBI ]
CGAP (NCI)Hs.686866
Alternative Splicing GalleryENSG00000230174
Gene ExpressionLINC01149 [ NCBI-GEO ]   LINC01149 [ EBI - ARRAY_EXPRESS ]   LINC01149 [ SEEK ]   LINC01149 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01149 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929111
GTEX Portal (Tissue expression)LINC01149
Human Protein AtlasENSG00000230174-LINC01149 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01149
DMDM Disease mutations101929111
Blocks (Seattle)LINC01149
Human Protein Atlas [tissue]ENSG00000230174-LINC01149 [tissue]
Protein Interaction databases
FunCoupENSG00000230174
BioGRIDLINC01149
STRING (EMBL)LINC01149
ZODIACLINC01149
Ontologies - Pathways
Huge Navigator LINC01149 [HugePedia]
snp3D : Map Gene to Disease101929111
BioCentury BCIQLINC01149
ClinGenLINC01149
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929111
Clinical trialLINC01149
Miscellaneous
canSAR (ICR)LINC01149 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01149
EVEXLINC01149
GoPubMedLINC01149
iHOPLINC01149
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:54:16 CEST 2018

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