Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01158 (long intergenic non-protein coding RNA 1158)

Identity

Alias_symbol (synonym)linc-Brn1a
Other aliaslinc-POU3F3
HGNC (Hugo) LINC01158
LocusID (NCBI) 100506421
Atlas_Id 65825
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 105421883 and ends at 105467934 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01158   49513
Cards
Entrez_Gene (NCBI)LINC01158  100506421  long intergenic non-protein coding RNA 1158
Aliaseslinc-Brn1a; linc-POU3F3
GeneCards (Weizmann)LINC01158
Ensembl hg19 (Hinxton) [Gene_View]  chr2:105421883-105467934 [Contig_View]  LINC01158 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:105421883-105467934 [Contig_View]  LINC01158 [Vega]
TCGA cBioPortalLINC01158
AceView (NCBI)LINC01158
Genatlas (Paris)LINC01158
WikiGenes100506421
SOURCE (Princeton)LINC01158
Genetics Home Reference (NIH)LINC01158
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01158  -     chr2:105421883-105467934 -  2q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01158  -     2q12.1   [Description]    (hg38-Dec_2013)
EnsemblLINC01158 - 2q12.1 [CytoView hg19]  LINC01158 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01158 [Mapview hg19]  LINC01158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI879178 AK096498 AL036798 BF700938 CK004193
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)LINC01158
Cluster EST : UnigeneHs.437281 [ NCBI ]
CGAP (NCI)Hs.437281
Gene ExpressionLINC01158 [ NCBI-GEO ]   LINC01158 [ EBI - ARRAY_EXPRESS ]   LINC01158 [ SEEK ]   LINC01158 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506421
GTEX Portal (Tissue expression)LINC01158
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01158
DMDM Disease mutations100506421
Blocks (Seattle)LINC01158
Protein Interaction databases
BioGRIDLINC01158
STRING (EMBL)LINC01158
ZODIACLINC01158
Ontologies - Pathways
Huge Navigator LINC01158 [HugePedia]
snp3D : Map Gene to Disease100506421
BioCentury BCIQLINC01158
ClinGenLINC01158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506421
Clinical trialLINC01158
Miscellaneous
canSAR (ICR)LINC01158 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01158
EVEXLINC01158
GoPubMedLINC01158
iHOPLINC01158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:13:13 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.