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LINC01158 (long intergenic non-protein coding RNA 1158)

Identity

Alias_symbol (synonym)linc-Brn1a
Other aliasPANTR1
linc-POU3F3
HGNC (Hugo) LINC01158
LocusID (NCBI) 100506421
Atlas_Id 65825
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 104805425 and ends at 104851476 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01158   49513
Cards
Entrez_Gene (NCBI)LINC01158  100506421  long intergenic non-protein coding RNA 1158
AliasesPANTR1; linc-Brn1a; linc-POU3F3
GeneCards (Weizmann)LINC01158
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:104805425-104851476 [Contig_View]  LINC01158 [Vega]
TCGA cBioPortalLINC01158
AceView (NCBI)LINC01158
Genatlas (Paris)LINC01158
WikiGenes100506421
SOURCE (Princeton)LINC01158
Genetics Home Reference (NIH)LINC01158
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01158  -     chr2:104805425-104851476 -  2q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01158  -     2q12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01158 - 2q12.1 [CytoView hg19]  LINC01158 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01158 [Mapview hg19]  LINC01158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI879178 AK096498 AL036798 BF700938 CK004193
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01158
Cluster EST : UnigeneHs.437281 [ NCBI ]
CGAP (NCI)Hs.437281
Gene ExpressionLINC01158 [ NCBI-GEO ]   LINC01158 [ EBI - ARRAY_EXPRESS ]   LINC01158 [ SEEK ]   LINC01158 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506421
GTEX Portal (Tissue expression)LINC01158
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01158
DMDM Disease mutations100506421
Blocks (Seattle)LINC01158
Protein Interaction databases
BioGRIDLINC01158
STRING (EMBL)LINC01158
ZODIACLINC01158
Ontologies - Pathways
Huge Navigator LINC01158 [HugePedia]
snp3D : Map Gene to Disease100506421
BioCentury BCIQLINC01158
ClinGenLINC01158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506421
Clinical trialLINC01158
Miscellaneous
canSAR (ICR)LINC01158 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01158
EVEXLINC01158
GoPubMedLINC01158
iHOPLINC01158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:08 CEST 2017

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