Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01160 (long intergenic non-protein coding RNA 1160)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01160
LocusID (NCBI) 100129269
Atlas_Id 65827
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111599007 and ends at 111608318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC01160   49525
Cards
Entrez_Gene (NCBI)LINC01160    long intergenic non-protein coding RNA 1160
Aliases
GeneCards (Weizmann)LINC01160
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:111599007-111608318 [Contig_View]  LINC01160 [Vega]
TCGA cBioPortalLINC01160
AceView (NCBI)LINC01160
Genatlas (Paris)LINC01160
SOURCE (Princeton)LINC01160
Genetics Home Reference (NIH)LINC01160
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01160  -     chr1:111599007-111608318 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01160  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01160 - 1p13.2 [CytoView hg19]  LINC01160 - 1p13.2 [CytoView hg38]
genome Data Viewer NCBILINC01160 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL553535 AL576506 BC063548
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01160
Gene ExpressionLINC01160 [ NCBI-GEO ]   LINC01160 [ EBI - ARRAY_EXPRESS ]   LINC01160 [ SEEK ]   LINC01160 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01160 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01160 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129269
GTEX Portal (Tissue expression)LINC01160
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01160
Blocks (Seattle)LINC01160
Protein Interaction databases
BioGRIDLINC01160
STRING (EMBL)LINC01160
ZODIACLINC01160
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01160
EVEXLINC01160
GoPubMedLINC01160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:01:42 CET 2020
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