Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01177 (long intergenic non-protein coding RNA 1177)


Alias (NCBI)-
HGNC (Hugo) LINC01177
LocusID (NCBI) 104355218
Atlas_Id 77546
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 9441294 and ends at 9444985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01177   49549
Entrez_Gene (NCBI)LINC01177    long intergenic non-protein coding RNA 1177
GeneCards (Weizmann)LINC01177
Ensembl hg19 (Hinxton)ENSG00000261397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261397 [Gene_View]  ENSG00000261397 [Sequence]  chr16:9441294-9444985 [Contig_View]  LINC01177 [Vega]
ICGC DataPortalENSG00000261397
TCGA cBioPortalLINC01177
AceView (NCBI)LINC01177
Genatlas (Paris)LINC01177
SOURCE (Princeton)LINC01177
Genetics Home Reference (NIH)LINC01177
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01177  -     chr16:9441294-9444985 -  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01177  -     16p13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01177 - 16p13.2 [CytoView hg19]  LINC01177 - 16p13.2 [CytoView hg38]
genome Data Viewer NCBILINC01177 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA725682
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01177
Alternative Splicing GalleryENSG00000261397
Gene ExpressionLINC01177 [ NCBI-GEO ]   LINC01177 [ EBI - ARRAY_EXPRESS ]   LINC01177 [ SEEK ]   LINC01177 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01177 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01177 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104355218
GTEX Portal (Tissue expression)LINC01177
Human Protein AtlasENSG00000261397-LINC01177 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01177
Blocks (Seattle)LINC01177
Human Protein Atlas [tissue]ENSG00000261397-LINC01177 [tissue]
Protein Interaction databases
Ontologies - Pathways
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:01:45 CET 2020

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