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LINC01177 (long intergenic non-protein coding RNA 1177)

Identity

Other alias-
HGNC (Hugo) LINC01177
LocusID (NCBI) 104355218
Atlas_Id 77546
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 9441294 and ends at 9444985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01177   49549
Cards
Entrez_Gene (NCBI)LINC01177  104355218  long intergenic non-protein coding RNA 1177
Aliases
GeneCards (Weizmann)LINC01177
Ensembl hg19 (Hinxton)ENSG00000261397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261397 [Gene_View]  chr16:9441294-9444985 [Contig_View]  LINC01177 [Vega]
ICGC DataPortalENSG00000261397
TCGA cBioPortalLINC01177
AceView (NCBI)LINC01177
Genatlas (Paris)LINC01177
WikiGenes104355218
SOURCE (Princeton)LINC01177
Genetics Home Reference (NIH)LINC01177
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01177  -     chr16:9441294-9444985 -  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01177  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01177 - 16p13.2 [CytoView hg19]  LINC01177 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBILINC01177 [Mapview hg19]  LINC01177 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA725682
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01177
Cluster EST : UnigeneHs.564967 [ NCBI ]
CGAP (NCI)Hs.564967
Alternative Splicing GalleryENSG00000261397
Gene ExpressionLINC01177 [ NCBI-GEO ]   LINC01177 [ EBI - ARRAY_EXPRESS ]   LINC01177 [ SEEK ]   LINC01177 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104355218
GTEX Portal (Tissue expression)LINC01177
Human Protein AtlasENSG00000261397-LINC01177 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01177
DMDM Disease mutations104355218
Blocks (Seattle)LINC01177
Human Protein Atlas [tissue]ENSG00000261397-LINC01177 [tissue]
Protein Interaction databases
FunCoupENSG00000261397
BioGRIDLINC01177
STRING (EMBL)LINC01177
ZODIACLINC01177
Ontologies - Pathways
Huge Navigator LINC01177 [HugePedia]
snp3D : Map Gene to Disease104355218
BioCentury BCIQLINC01177
ClinGenLINC01177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104355218
Clinical trialLINC01177
Miscellaneous
canSAR (ICR)LINC01177 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01177
EVEXLINC01177
GoPubMedLINC01177
iHOPLINC01177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:43 CET 2017

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