Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01180 (long intergenic non-protein coding RNA 1180)

Identity

Other alias-
HGNC (Hugo) LINC01180
LocusID (NCBI) 101927017
Atlas_Id 65838
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44646364 and ends at 44650349 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01180   49558
Cards
Entrez_Gene (NCBI)LINC01180  101927017  long intergenic non-protein coding RNA 1180
Aliases
GeneCards (Weizmann)LINC01180
Ensembl hg19 (Hinxton)ENSG00000266979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266979 [Gene_View]  chr17:44646364-44650349 [Contig_View]  LINC01180 [Vega]
ICGC DataPortalENSG00000266979
TCGA cBioPortalLINC01180
AceView (NCBI)LINC01180
Genatlas (Paris)LINC01180
WikiGenes101927017
SOURCE (Princeton)LINC01180
Genetics Home Reference (NIH)LINC01180
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01180  -     chr17:44646364-44650349 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01180  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01180 - 17q21.31 [CytoView hg19]  LINC01180 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC01180 [Mapview hg19]  LINC01180 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043289
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01180
Cluster EST : UnigeneHs.560554 [ NCBI ]
CGAP (NCI)Hs.560554
Alternative Splicing GalleryENSG00000266979
Gene ExpressionLINC01180 [ NCBI-GEO ]   LINC01180 [ EBI - ARRAY_EXPRESS ]   LINC01180 [ SEEK ]   LINC01180 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927017
GTEX Portal (Tissue expression)LINC01180
Human Protein AtlasENSG00000266979-LINC01180 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01180
DMDM Disease mutations101927017
Blocks (Seattle)LINC01180
Human Protein Atlas [tissue]ENSG00000266979-LINC01180 [tissue]
Protein Interaction databases
FunCoupENSG00000266979
BioGRIDLINC01180
STRING (EMBL)LINC01180
ZODIACLINC01180
Ontologies - Pathways
Huge Navigator LINC01180 [HugePedia]
snp3D : Map Gene to Disease101927017
BioCentury BCIQLINC01180
ClinGenLINC01180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927017
Clinical trialLINC01180
Miscellaneous
canSAR (ICR)LINC01180 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01180
EVEXLINC01180
GoPubMedLINC01180
iHOPLINC01180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:38:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.