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LINC01193 (long intergenic non-protein coding RNA 1193)

Identity

Alias (NCBI)CT60
HGNC (Hugo) LINC01193
HGNC Alias symbLOC348120
HGNC Previous nameCT60
HGNC Previous namecancer/testis antigen 60
LocusID (NCBI) 348120
Atlas_Id 53108
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 20940438 and ends at 20993304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01193   28003
Cards
Entrez_Gene (NCBI)LINC01193  348120  long intergenic non-protein coding RNA 1193
AliasesCT60
GeneCards (Weizmann)LINC01193
Ensembl hg19 (Hinxton)ENSG00000258710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258710 [Gene_View]  ENSG00000258710 [Sequence]  chr15:20940438-20993304 [Contig_View]  LINC01193 [Vega]
ICGC DataPortalENSG00000258710
TCGA cBioPortalLINC01193
AceView (NCBI)LINC01193
Genatlas (Paris)LINC01193
WikiGenes348120
SOURCE (Princeton)LINC01193
Genetics Home Reference (NIH)LINC01193
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01193  -     chr15:20940438-20993304 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01193  -     15q11.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC01193 - 15q11.2 [CytoView hg19]  LINC01193 - 15q11.2 [CytoView hg38]
ImmunoBaseENSG00000258710
genome Data Viewer NCBILINC01193 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC047459
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01193
Alternative Splicing GalleryENSG00000258710
Gene ExpressionLINC01193 [ NCBI-GEO ]   LINC01193 [ EBI - ARRAY_EXPRESS ]   LINC01193 [ SEEK ]   LINC01193 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01193 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01193 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348120
GTEX Portal (Tissue expression)LINC01193
Human Protein AtlasENSG00000258710-LINC01193 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01193
DMDM Disease mutations348120
Blocks (Seattle)LINC01193
Human Protein Atlas [tissue]ENSG00000258710-LINC01193 [tissue]
Protein Interaction databases
FunCoupENSG00000258710
BioGRIDLINC01193
STRING (EMBL)LINC01193
ZODIACLINC01193
Ontologies - Pathways
Huge Navigator LINC01193 [HugePedia]
snp3D : Map Gene to Disease348120
BioCentury BCIQLINC01193
ClinGenLINC01193
Clinical trials, drugs, therapy
Protein Interactions : CTD348120
Clinical trialLINC01193
Miscellaneous
canSAR (ICR)LINC01193 (select the gene name)
HarmonizomeLINC01193
DataMed IndexLINC01193
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01193
EVEXLINC01193
GoPubMedLINC01193
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:20:30 CEST 2020

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