Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01205 (long intergenic non-protein coding RNA 1205)

Identity

Other alias-
HGNC (Hugo) LINC01205
LocusID (NCBI) 401082
Atlas_Id 65854
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 109409990 and ends at 109495167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01205   49636
Cards
Entrez_Gene (NCBI)LINC01205  401082  long intergenic non-protein coding RNA 1205
Aliases
GeneCards (Weizmann)LINC01205
Ensembl hg19 (Hinxton)ENSG00000228980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228980 [Gene_View]  chr3:109409990-109495167 [Contig_View]  LINC01205 [Vega]
ICGC DataPortalENSG00000228980
TCGA cBioPortalLINC01205
AceView (NCBI)LINC01205
Genatlas (Paris)LINC01205
WikiGenes401082
SOURCE (Princeton)LINC01205
Genetics Home Reference (NIH)LINC01205
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01205  -     chr3:109409990-109495167 +  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01205  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01205 - 3q13.13 [CytoView hg19]  LINC01205 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBILINC01205 [Mapview hg19]  LINC01205 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058092 BC044821
RefSeq transcript (Entrez)NM_001145553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01205
Cluster EST : UnigeneHs.477089 [ NCBI ]
CGAP (NCI)Hs.477089
Alternative Splicing GalleryENSG00000228980
Gene ExpressionLINC01205 [ NCBI-GEO ]   LINC01205 [ EBI - ARRAY_EXPRESS ]   LINC01205 [ SEEK ]   LINC01205 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01205 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401082
GTEX Portal (Tissue expression)LINC01205
Human Protein AtlasENSG00000228980-LINC01205 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01205
DMDM Disease mutations401082
Blocks (Seattle)LINC01205
Human Protein Atlas [tissue]ENSG00000228980-LINC01205 [tissue]
IPIIPI00792763   
Protein Interaction databases
FunCoupENSG00000228980
BioGRIDLINC01205
STRING (EMBL)LINC01205
ZODIACLINC01205
Ontologies - Pathways
Huge Navigator LINC01205 [HugePedia]
snp3D : Map Gene to Disease401082
BioCentury BCIQLINC01205
ClinGenLINC01205
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401082
Clinical trialLINC01205
Miscellaneous
canSAR (ICR)LINC01205 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01205
EVEXLINC01205
GoPubMedLINC01205
iHOPLINC01205
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:55 CET 2017

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