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LINC01213 (long intergenic non-protein coding RNA 1213)

Identity

Other alias-
HGNC (Hugo) LINC01213
LocusID (NCBI) 101927992
Atlas_Id 65861
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150238700 and ends at 150240205 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01213   49648
Cards
Entrez_Gene (NCBI)LINC01213  101927992  long intergenic non-protein coding RNA 1213
Aliases
GeneCards (Weizmann)LINC01213
Ensembl hg19 (Hinxton)ENSG00000244541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244541 [Gene_View]  chr3:150238700-150240205 [Contig_View]  LINC01213 [Vega]
ICGC DataPortalENSG00000244541
TCGA cBioPortalLINC01213
AceView (NCBI)LINC01213
Genatlas (Paris)LINC01213
WikiGenes101927992
SOURCE (Princeton)LINC01213
Genetics Home Reference (NIH)LINC01213
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01213  -     chr3:150238700-150240205 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01213  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01213 - 3q25.1 [CytoView hg19]  LINC01213 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBILINC01213 [Mapview hg19]  LINC01213 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW195433 BF676681
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01213
Cluster EST : UnigeneHs.534682 [ NCBI ]
CGAP (NCI)Hs.534682
Alternative Splicing GalleryENSG00000244541
Gene ExpressionLINC01213 [ NCBI-GEO ]   LINC01213 [ EBI - ARRAY_EXPRESS ]   LINC01213 [ SEEK ]   LINC01213 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01213 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927992
GTEX Portal (Tissue expression)LINC01213
Human Protein AtlasENSG00000244541-LINC01213 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01213
DMDM Disease mutations101927992
Blocks (Seattle)LINC01213
Human Protein Atlas [tissue]ENSG00000244541-LINC01213 [tissue]
Protein Interaction databases
FunCoupENSG00000244541
BioGRIDLINC01213
STRING (EMBL)LINC01213
ZODIACLINC01213
Ontologies - Pathways
Huge Navigator LINC01213 [HugePedia]
snp3D : Map Gene to Disease101927992
BioCentury BCIQLINC01213
ClinGenLINC01213
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927992
Clinical trialLINC01213
Miscellaneous
canSAR (ICR)LINC01213 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01213
EVEXLINC01213
GoPubMedLINC01213
iHOPLINC01213
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:56 CET 2017

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