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LINC01215 (long intergenic non-protein coding RNA 1215)

Identity

Other alias-
HGNC (Hugo) LINC01215
LocusID (NCBI) 101929623
Atlas_Id 65863
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 108125821 and ends at 108138610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01215   49651
Cards
Entrez_Gene (NCBI)LINC01215  101929623  long intergenic non-protein coding RNA 1215
Aliases
GeneCards (Weizmann)LINC01215
Ensembl hg19 (Hinxton)ENSG00000271856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271856 [Gene_View]  chr3:108125821-108138610 [Contig_View]  LINC01215 [Vega]
ICGC DataPortalENSG00000271856
TCGA cBioPortalLINC01215
AceView (NCBI)LINC01215
Genatlas (Paris)LINC01215
WikiGenes101929623
SOURCE (Princeton)LINC01215
Genetics Home Reference (NIH)LINC01215
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01215  -     chr3:108125821-108138610 +  3q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01215  -     3q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01215 - 3q13.12 [CytoView hg19]  LINC01215 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01215 [Mapview hg19]  LINC01215 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA813865 AW292872 CT001622
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01215
Cluster EST : UnigeneHs.570653 [ NCBI ]
CGAP (NCI)Hs.570653
Alternative Splicing GalleryENSG00000271856
Gene ExpressionLINC01215 [ NCBI-GEO ]   LINC01215 [ EBI - ARRAY_EXPRESS ]   LINC01215 [ SEEK ]   LINC01215 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01215 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929623
GTEX Portal (Tissue expression)LINC01215
Human Protein AtlasENSG00000271856-LINC01215 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01215
DMDM Disease mutations101929623
Blocks (Seattle)LINC01215
Human Protein Atlas [tissue]ENSG00000271856-LINC01215 [tissue]
Protein Interaction databases
FunCoupENSG00000271856
BioGRIDLINC01215
STRING (EMBL)LINC01215
ZODIACLINC01215
Ontologies - Pathways
Huge Navigator LINC01215 [HugePedia]
snp3D : Map Gene to Disease101929623
BioCentury BCIQLINC01215
ClinGenLINC01215
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929623
Clinical trialLINC01215
Miscellaneous
canSAR (ICR)LINC01215 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01215
EVEXLINC01215
GoPubMedLINC01215
iHOPLINC01215
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:48 CET 2017

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