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LINC01216 (long intergenic non-protein coding RNA 1216)

Identity

Alias_namesEMCN-IT3
EMCN intronic transcript 3 (non-protein coding)
Other alias
HGNC (Hugo) LINC01216
LocusID (NCBI) 100874275
Atlas_Id 65864
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 100660279 and ends at 100675113 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01216   41418
Cards
Entrez_Gene (NCBI)LINC01216  100874275  long intergenic non-protein coding RNA 1216
AliasesEMCN-IT3
GeneCards (Weizmann)LINC01216
Ensembl hg19 (Hinxton)ENSG00000250223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250223 [Gene_View]  chr4:100660279-100675113 [Contig_View]  LINC01216 [Vega]
ICGC DataPortalENSG00000250223
TCGA cBioPortalLINC01216
AceView (NCBI)LINC01216
Genatlas (Paris)LINC01216
WikiGenes100874275
SOURCE (Princeton)LINC01216
Genetics Home Reference (NIH)LINC01216
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01216  -     chr4:100660279-100675113 -  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01216  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblLINC01216 - 4q24 [CytoView hg19]  LINC01216 - 4q24 [CytoView hg38]
Mapping of homologs : NCBILINC01216 [Mapview hg19]  LINC01216 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA446329 AA446509
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01216
Cluster EST : UnigeneHs.136318 [ NCBI ]
CGAP (NCI)Hs.136318
Alternative Splicing GalleryENSG00000250223
Gene ExpressionLINC01216 [ NCBI-GEO ]   LINC01216 [ EBI - ARRAY_EXPRESS ]   LINC01216 [ SEEK ]   LINC01216 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01216 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874275
GTEX Portal (Tissue expression)LINC01216
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01216
DMDM Disease mutations100874275
Blocks (Seattle)LINC01216
Human Protein AtlasENSG00000250223
Protein Interaction databases
FunCoupENSG00000250223
BioGRIDLINC01216
STRING (EMBL)LINC01216
ZODIACLINC01216
Ontologies - Pathways
Huge Navigator LINC01216 [HugePedia]
snp3D : Map Gene to Disease100874275
BioCentury BCIQLINC01216
ClinGenLINC01216
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874275
Clinical trialLINC01216
Miscellaneous
canSAR (ICR)LINC01216 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01216
EVEXLINC01216
GoPubMedLINC01216
iHOPLINC01216
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:13 CEST 2017

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