Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01232 (long intergenic non-protein coding RNA 1232)

Identity

Alias_symbol (synonym)FLJ41590
TCONS_00021520
Other alias
HGNC (Hugo) LINC01232
LocusID (NCBI) 102725509
Atlas_Id 65874
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99486962 and ends at 99499306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01232   49755
Cards
Entrez_Gene (NCBI)LINC01232  102725509  long intergenic non-protein coding RNA 1232
AliasesTCONS_00021520
GeneCards (Weizmann)LINC01232
Ensembl hg19 (Hinxton)ENSG00000280734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280734 [Gene_View]  chr13:99486962-99499306 [Contig_View]  LINC01232 [Vega]
ICGC DataPortalENSG00000280734
TCGA cBioPortalLINC01232
AceView (NCBI)LINC01232
Genatlas (Paris)LINC01232
WikiGenes102725509
SOURCE (Princeton)LINC01232
Genetics Home Reference (NIH)LINC01232
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01232  -     chr13:99486962-99499306 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01232  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01232 - 13q32.3 [CytoView hg19]  LINC01232 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC01232 [Mapview hg19]  LINC01232 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123584 BC043507 DA079673 DB054769
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01232
Cluster EST : UnigeneHs.648968 [ NCBI ]
CGAP (NCI)Hs.648968
Alternative Splicing GalleryENSG00000280734
Gene ExpressionLINC01232 [ NCBI-GEO ]   LINC01232 [ EBI - ARRAY_EXPRESS ]   LINC01232 [ SEEK ]   LINC01232 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01232 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102725509
GTEX Portal (Tissue expression)LINC01232
Human Protein AtlasENSG00000280734-LINC01232 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01232
DMDM Disease mutations102725509
Blocks (Seattle)LINC01232
Human Protein Atlas [tissue]ENSG00000280734-LINC01232 [tissue]
Protein Interaction databases
FunCoupENSG00000280734
BioGRIDLINC01232
STRING (EMBL)LINC01232
ZODIACLINC01232
Ontologies - Pathways
Huge Navigator LINC01232 [HugePedia]
snp3D : Map Gene to Disease102725509
BioCentury BCIQLINC01232
ClinGenLINC01232
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102725509
Clinical trialLINC01232
Miscellaneous
canSAR (ICR)LINC01232 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01232
EVEXLINC01232
GoPubMedLINC01232
iHOPLINC01232
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:31 CET 2017

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