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LINC01233 (long intergenic non-protein coding RNA 1233)

Identity

Alias_symbol (synonym)XLOC_013014
Other alias
HGNC (Hugo) LINC01233
LocusID (NCBI) 100128139
Atlas_Id 65875
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22532626 and ends at 22533494 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01233   49756
Cards
Entrez_Gene (NCBI)LINC01233  100128139  long intergenic non-protein coding RNA 1233
AliasesXLOC_013014
GeneCards (Weizmann)LINC01233
Ensembl hg19 (Hinxton)ENSG00000269364 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269364 [Gene_View]  chr19:22532626-22533494 [Contig_View]  LINC01233 [Vega]
ICGC DataPortalENSG00000269364
TCGA cBioPortalLINC01233
AceView (NCBI)LINC01233
Genatlas (Paris)LINC01233
WikiGenes100128139
SOURCE (Princeton)LINC01233
Genetics Home Reference (NIH)LINC01233
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01233  -     chr19:22532626-22533494 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01233  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblLINC01233 - 19p12 [CytoView hg19]  LINC01233 - 19p12 [CytoView hg38]
Mapping of homologs : NCBILINC01233 [Mapview hg19]  LINC01233 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI221170 AI911139 BX092359 HY002653
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01233
Cluster EST : UnigeneHs.550683 [ NCBI ]
CGAP (NCI)Hs.550683
Alternative Splicing GalleryENSG00000269364
Gene ExpressionLINC01233 [ NCBI-GEO ]   LINC01233 [ EBI - ARRAY_EXPRESS ]   LINC01233 [ SEEK ]   LINC01233 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01233 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100128139
GTEX Portal (Tissue expression)LINC01233
Human Protein AtlasENSG00000269364-LINC01233 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01233
DMDM Disease mutations100128139
Blocks (Seattle)LINC01233
Human Protein Atlas [tissue]ENSG00000269364-LINC01233 [tissue]
Protein Interaction databases
FunCoupENSG00000269364
BioGRIDLINC01233
STRING (EMBL)LINC01233
ZODIACLINC01233
Ontologies - Pathways
Huge Navigator LINC01233 [HugePedia]
snp3D : Map Gene to Disease100128139
BioCentury BCIQLINC01233
ClinGenLINC01233
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128139
Clinical trialLINC01233
Miscellaneous
canSAR (ICR)LINC01233 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01233
EVEXLINC01233
GoPubMedLINC01233
iHOPLINC01233
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:55:51 CET 2017

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