Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01238 (long intergenic non-protein coding RNA 1238)

Identity

Alias_symbol (synonym)FLJ40615
Other alias-
HGNC (Hugo) LINC01238
LocusID (NCBI) 102723927
Atlas_Id 79511
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241970683 and ends at 241977276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01238   49795
Cards
Entrez_Gene (NCBI)LINC01238  102723927  long intergenic non-protein coding RNA 1238
Aliases
GeneCards (Weizmann)LINC01238
Ensembl hg19 (Hinxton)ENSG00000237940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237940 [Gene_View]  chr2:241970683-241977276 [Contig_View]  LINC01238 [Vega]
ICGC DataPortalENSG00000237940
TCGA cBioPortalLINC01238
AceView (NCBI)LINC01238
Genatlas (Paris)LINC01238
WikiGenes102723927
SOURCE (Princeton)LINC01238
Genetics Home Reference (NIH)LINC01238
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01238  -     chr2:241970683-241977276 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01238  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01238 - 2q37.3 [CytoView hg19]  LINC01238 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBILINC01238 [Mapview hg19]  LINC01238 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097934
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NT_187523 NT_187647
Consensus coding sequences : CCDS (NCBI)LINC01238
Cluster EST : UnigeneHs.733585 [ NCBI ]
CGAP (NCI)Hs.733585
Alternative Splicing GalleryENSG00000237940
Gene ExpressionLINC01238 [ NCBI-GEO ]   LINC01238 [ EBI - ARRAY_EXPRESS ]   LINC01238 [ SEEK ]   LINC01238 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01238 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723927
GTEX Portal (Tissue expression)LINC01238
Human Protein AtlasENSG00000237940-LINC01238 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01238
DMDM Disease mutations102723927
Blocks (Seattle)LINC01238
Human Protein Atlas [tissue]ENSG00000237940-LINC01238 [tissue]
Protein Interaction databases
FunCoupENSG00000237940
BioGRIDLINC01238
STRING (EMBL)LINC01238
ZODIACLINC01238
Ontologies - Pathways
Huge Navigator LINC01238 [HugePedia]
snp3D : Map Gene to Disease102723927
BioCentury BCIQLINC01238
ClinGenLINC01238
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723927
Clinical trialLINC01238
Miscellaneous
canSAR (ICR)LINC01238 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01238
EVEXLINC01238
GoPubMedLINC01238
iHOPLINC01238
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:00 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.