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LINC01246 (long intergenic non-protein coding RNA 1246)

Identity

Other alias-
HGNC (Hugo) LINC01246
LocusID (NCBI) 102800315
Atlas_Id 65883
Location 2p25.2  [Link to chromosome band 2p25]
Location_base_pair Starts at 6626109 and ends at 6634706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01246   49840
Cards
Entrez_Gene (NCBI)LINC01246  102800315  long intergenic non-protein coding RNA 1246
Aliases
GeneCards (Weizmann)LINC01246
Ensembl hg19 (Hinxton)ENSG00000236172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236172 [Gene_View]  chr2:6626109-6634706 [Contig_View]  LINC01246 [Vega]
ICGC DataPortalENSG00000236172
TCGA cBioPortalLINC01246
AceView (NCBI)LINC01246
Genatlas (Paris)LINC01246
WikiGenes102800315
SOURCE (Princeton)LINC01246
Genetics Home Reference (NIH)LINC01246
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01246  -     chr2:6626109-6634706 -  2p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01246  -     2p25.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01246 - 2p25.2 [CytoView hg19]  LINC01246 - 2p25.2 [CytoView hg38]
Mapping of homologs : NCBILINC01246 [Mapview hg19]  LINC01246 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX096693 DB339321
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01246
Cluster EST : UnigeneHs.739593 [ NCBI ]
CGAP (NCI)Hs.739593
Alternative Splicing GalleryENSG00000236172
Gene ExpressionLINC01246 [ NCBI-GEO ]   LINC01246 [ EBI - ARRAY_EXPRESS ]   LINC01246 [ SEEK ]   LINC01246 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01246 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102800315
GTEX Portal (Tissue expression)LINC01246
Human Protein AtlasENSG00000236172-LINC01246 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01246
DMDM Disease mutations102800315
Blocks (Seattle)LINC01246
Human Protein Atlas [tissue]ENSG00000236172-LINC01246 [tissue]
Protein Interaction databases
FunCoupENSG00000236172
BioGRIDLINC01246
STRING (EMBL)LINC01246
ZODIACLINC01246
Ontologies - Pathways
Huge Navigator LINC01246 [HugePedia]
snp3D : Map Gene to Disease102800315
BioCentury BCIQLINC01246
ClinGenLINC01246
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102800315
Clinical trialLINC01246
Miscellaneous
canSAR (ICR)LINC01246 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01246
EVEXLINC01246
GoPubMedLINC01246
iHOPLINC01246
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:00 CET 2017

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