Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01270 (long intergenic non-protein coding RNA 1270)

Identity

Other alias-
HGNC (Hugo) LINC01270
LocusID (NCBI) 284751
Atlas_Id 65901
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50292720 and ends at 50314919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01270   27658
Cards
Entrez_Gene (NCBI)LINC01270  284751  long intergenic non-protein coding RNA 1270
Aliases
GeneCards (Weizmann)LINC01270
Ensembl hg19 (Hinxton)ENSG00000203999 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203999 [Gene_View]  chr20:50292720-50314919 [Contig_View]  LINC01270 [Vega]
ICGC DataPortalENSG00000203999
TCGA cBioPortalLINC01270
AceView (NCBI)LINC01270
Genatlas (Paris)LINC01270
WikiGenes284751
SOURCE (Princeton)LINC01270
Genetics Home Reference (NIH)LINC01270
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01270  -     chr20:50292720-50314919 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01270  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01270 - 20q13.13 [CytoView hg19]  LINC01270 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBILINC01270 [Mapview hg19]  LINC01270 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090605 BC093937 BC093939
RefSeq transcript (Entrez)NM_001025463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01270
Cluster EST : UnigeneHs.282325 [ NCBI ]
CGAP (NCI)Hs.282325
Alternative Splicing GalleryENSG00000203999
Gene ExpressionLINC01270 [ NCBI-GEO ]   LINC01270 [ EBI - ARRAY_EXPRESS ]   LINC01270 [ SEEK ]   LINC01270 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01270 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)284751
GTEX Portal (Tissue expression)LINC01270
Human Protein AtlasENSG00000203999-LINC01270 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01270
DMDM Disease mutations284751
Blocks (Seattle)LINC01270
Human Protein Atlas [tissue]ENSG00000203999-LINC01270 [tissue]
HPRD18771
IPIIPI00401729   
Protein Interaction databases
FunCoupENSG00000203999
BioGRIDLINC01270
STRING (EMBL)LINC01270
ZODIACLINC01270
Ontologies - Pathways
Huge Navigator LINC01270 [HugePedia]
snp3D : Map Gene to Disease284751
BioCentury BCIQLINC01270
ClinGenLINC01270
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284751
Clinical trialLINC01270
Miscellaneous
canSAR (ICR)LINC01270 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01270
EVEXLINC01270
GoPubMedLINC01270
iHOPLINC01270
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:41 CET 2017

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