Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01287 (long intergenic non-protein coding RNA 1287)

Identity

Alias_symbol (synonym)TCONS_l2_00027522
Other alias
HGNC (Hugo) LINC01287
LocusID (NCBI) 103724390
Atlas_Id 65914
Location 7q36.2  [Link to chromosome band 7q36]
Location_base_pair Starts at 153399919 and ends at 153412234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01287   50351
Cards
Entrez_Gene (NCBI)LINC01287  103724390  long intergenic non-protein coding RNA 1287
AliasesTCONS_l2_00027522
GeneCards (Weizmann)LINC01287
Ensembl hg19 (Hinxton)ENSG00000234722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234722 [Gene_View]  chr7:153399919-153412234 [Contig_View]  LINC01287 [Vega]
ICGC DataPortalENSG00000234722
TCGA cBioPortalLINC01287
AceView (NCBI)LINC01287
Genatlas (Paris)LINC01287
WikiGenes103724390
SOURCE (Princeton)LINC01287
Genetics Home Reference (NIH)LINC01287
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01287  -     chr7:153399919-153412234 -  7q36.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01287  -     7q36.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01287 - 7q36.2 [CytoView hg19]  LINC01287 - 7q36.2 [CytoView hg38]
Mapping of homologs : NCBILINC01287 [Mapview hg19]  LINC01287 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF514057
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01287
Cluster EST : UnigeneHs.614280 [ NCBI ]
CGAP (NCI)Hs.614280
Alternative Splicing GalleryENSG00000234722
Gene ExpressionLINC01287 [ NCBI-GEO ]   LINC01287 [ EBI - ARRAY_EXPRESS ]   LINC01287 [ SEEK ]   LINC01287 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01287 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103724390
GTEX Portal (Tissue expression)LINC01287
Human Protein AtlasENSG00000234722-LINC01287 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01287
DMDM Disease mutations103724390
Blocks (Seattle)LINC01287
Human Protein Atlas [tissue]ENSG00000234722-LINC01287 [tissue]
Protein Interaction databases
FunCoupENSG00000234722
BioGRIDLINC01287
STRING (EMBL)LINC01287
ZODIACLINC01287
Ontologies - Pathways
Huge Navigator LINC01287 [HugePedia]
snp3D : Map Gene to Disease103724390
BioCentury BCIQLINC01287
ClinGenLINC01287
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103724390
Clinical trialLINC01287
Miscellaneous
canSAR (ICR)LINC01287 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01287
EVEXLINC01287
GoPubMedLINC01287
iHOPLINC01287
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:16:25 CET 2017

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