Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01293 (long intergenic non-protein coding RNA 1293)

Identity

Alias_symbol (synonym)TCONS_00002938
Other alias-
HGNC (Hugo) LINC01293
LocusID (NCBI) 101927861
Atlas_Id 65918
Location 2p12  [Link to chromosome band 2p12]
Location_base_pair Starts at 74940258 and ends at 74942669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01293   50362
Cards
Entrez_Gene (NCBI)LINC01293  101927861  long intergenic non-protein coding RNA 1293
Aliases
GeneCards (Weizmann)LINC01293
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:74940258-74942669 [Contig_View]  LINC01293 [Vega]
TCGA cBioPortalLINC01293
AceView (NCBI)LINC01293
Genatlas (Paris)LINC01293
WikiGenes101927861
SOURCE (Princeton)LINC01293
Genetics Home Reference (NIH)LINC01293
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01293  -     chr2:74940258-74942669 +  2p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01293  -     2p12   [Description]    (hg19-Feb_2009)
EnsemblLINC01293 - 2p12 [CytoView hg19]  LINC01293 - 2p12 [CytoView hg38]
Mapping of homologs : NCBILINC01293 [Mapview hg19]  LINC01293 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038580
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01293
Cluster EST : UnigeneHs.385784 [ NCBI ]
CGAP (NCI)Hs.385784
Gene ExpressionLINC01293 [ NCBI-GEO ]   LINC01293 [ EBI - ARRAY_EXPRESS ]   LINC01293 [ SEEK ]   LINC01293 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01293 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927861
GTEX Portal (Tissue expression)LINC01293
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01293
DMDM Disease mutations101927861
Blocks (Seattle)LINC01293
Protein Interaction databases
BioGRIDLINC01293
STRING (EMBL)LINC01293
ZODIACLINC01293
Ontologies - Pathways
Huge Navigator LINC01293 [HugePedia]
snp3D : Map Gene to Disease101927861
BioCentury BCIQLINC01293
ClinGenLINC01293
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927861
Clinical trialLINC01293
Miscellaneous
canSAR (ICR)LINC01293 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01293
EVEXLINC01293
GoPubMedLINC01293
iHOPLINC01293
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:38:44 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.