Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01309 (long intergenic non-protein coding RNA 1309)


Alias (NCBI)TCONS_l2_00007459
HGNC (Hugo) LINC01309
HGNC Alias symbTCONS_l2_00007459
LocusID (NCBI) 104326190
Atlas_Id 76893
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 103425200 and ends at 103427685 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01309   50497
Entrez_Gene (NCBI)LINC01309    long intergenic non-protein coding RNA 1309
GeneCards (Weizmann)LINC01309
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:103425200-103427685 [Contig_View]  LINC01309 [Vega]
TCGA cBioPortalLINC01309
AceView (NCBI)LINC01309
Genatlas (Paris)LINC01309
SOURCE (Princeton)LINC01309
Genetics Home Reference (NIH)LINC01309
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01309  -     chr13:103425200-103427685 +  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01309  -     13q33.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01309 - 13q33.1 [CytoView hg19]  LINC01309 - 13q33.1 [CytoView hg38]
Genome Data Viewer NCBILINC01309 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA421210 BG219159
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01309
Gene ExpressionLINC01309 [ NCBI-GEO ]   LINC01309 [ EBI - ARRAY_EXPRESS ]   LINC01309 [ SEEK ]   LINC01309 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01309 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01309 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104326190
GTEX Portal (Tissue expression)LINC01309
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01309
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:57:36 CEST 2021

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