Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01312 (long intergenic non-protein coding RNA 1312)

Identity

Alias_symbol (synonym)MGC34034
Other alias-
HGNC (Hugo) LINC01312
LocusID (NCBI) 154089
Atlas_Id 65928
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 133821147 and ends at 133853992 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01312   28525
Cards
Entrez_Gene (NCBI)LINC01312  154089  long intergenic non-protein coding RNA 1312
Aliases
GeneCards (Weizmann)LINC01312
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:133821147-133853992 [Contig_View]  LINC01312 [Vega]
TCGA cBioPortalLINC01312
AceView (NCBI)LINC01312
Genatlas (Paris)LINC01312
WikiGenes154089
SOURCE (Princeton)LINC01312
Genetics Home Reference (NIH)LINC01312
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01312  -     chr6:133821147-133853992 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01312  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01312 - 6q23.2 [CytoView hg19]  LINC01312 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC01312 [Mapview hg19]  LINC01312 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032958 DQ895624 EU176215
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01312
Cluster EST : UnigeneHs.126165 [ NCBI ]
CGAP (NCI)Hs.126165
Gene ExpressionLINC01312 [ NCBI-GEO ]   LINC01312 [ EBI - ARRAY_EXPRESS ]   LINC01312 [ SEEK ]   LINC01312 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01312 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)154089
GTEX Portal (Tissue expression)LINC01312
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01312
DMDM Disease mutations154089
Blocks (Seattle)LINC01312
Protein Interaction databases
BioGRIDLINC01312
STRING (EMBL)LINC01312
ZODIACLINC01312
Ontologies - Pathways
Huge Navigator LINC01312 [HugePedia]
snp3D : Map Gene to Disease154089
BioCentury BCIQLINC01312
ClinGenLINC01312
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154089
Clinical trialLINC01312
Miscellaneous
canSAR (ICR)LINC01312 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01312
EVEXLINC01312
GoPubMedLINC01312
iHOPLINC01312
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:54:41 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.